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Release 2.0.2 #659

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merged 6 commits into from
May 1, 2024
Merged

Release 2.0.2 #659

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e9b57ed
Next development iteration `v2.0.2-SNAPSHOT`.
ielis Apr 16, 2024
2f53672
Remove the extra `\t` from the TSV template.
ielis May 1, 2024
d02a64d
Merge pull request #657 from TheJacksonLaboratory/fix-tsv-template
ielis May 1, 2024
cb43cab
Use `en_US` to run tests.
ielis May 1, 2024
cb8fb05
Merge pull request #658 from TheJacksonLaboratory/fix-locale-issue
ielis May 1, 2024
ba4f08c
Make release `v2.0.2`.
ielis May 1, 2024
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7 changes: 7 additions & 0 deletions CHANGELOG.rst
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Expand Up @@ -6,6 +6,13 @@ Changelog
latest
-------------------

-------------------
v2.0.2 (2024-05-01)
-------------------

- Use `en_US` locale for running tests
- Remove an extra `\t` from the TSV header

-------------------
v2.0.1 (2024-04-16)
-------------------
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2 changes: 1 addition & 1 deletion docs/conf.py
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Expand Up @@ -56,7 +56,7 @@
# The short X.Y version.
version = u'2.0'
# The full version, including alpha/beta/rc tags.
release = u'2.0.1'
release = u'2.0.2'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
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2 changes: 1 addition & 1 deletion lirical-background/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<artifactId>LIRICAL</artifactId>
<groupId>org.monarchinitiative.lirical</groupId>
<version>2.0.1</version>
<version>2.0.2</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion lirical-cli/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<artifactId>LIRICAL</artifactId>
<groupId>org.monarchinitiative.lirical</groupId>
<version>2.0.1</version>
<version>2.0.2</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion lirical-cli/src/main/java/org/monarchinitiative/lirical/cli/Main.java
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Expand Up @@ -16,7 +16,7 @@
footer = Main.FOOTER)
public class Main implements Callable<Integer> {

public static final String VERSION = "lirical v2.0.1";
public static final String VERSION = "lirical v2.0.2";
public static final int WIDTH = 120;
public static final String FOOTER = "\nSee the full documentation at https://thejacksonlaboratory.github.io/LIRICAL/stable";

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2 changes: 1 addition & 1 deletion lirical-configuration/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<artifactId>LIRICAL</artifactId>
<groupId>org.monarchinitiative.lirical</groupId>
<version>2.0.1</version>
<version>2.0.2</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion lirical-core/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<artifactId>LIRICAL</artifactId>
<groupId>org.monarchinitiative.lirical</groupId>
<version>2.0.1</version>
<version>2.0.2</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion lirical-exomiser-db-adapter/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<artifactId>LIRICAL</artifactId>
<groupId>org.monarchinitiative.lirical</groupId>
<version>2.0.1</version>
<version>2.0.2</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion lirical-io/pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<artifactId>LIRICAL</artifactId>
<groupId>org.monarchinitiative.lirical</groupId>
<version>2.0.1</version>
<version>2.0.2</version>
</parent>
<modelVersion>4.0.0</modelVersion>

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2 changes: 1 addition & 1 deletion lirical-io/src/main/resources/org/monarchinitiative/lirical/io/output/liricalTSV.ftl
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Expand Up @@ -19,7 +19,7 @@ rank${tab}diseaseName${tab}diseaseCurie${tab}pretestprob${tab}posttestprob${tab}
${dd.rank}${tab}${dd.diseaseName}${tab}${dd.diseaseCurie}${tab}${dd.pretestprob}${tab}${dd.posttestprob}${tab}${dd.compositeLR}
</#list>
<#else>
rank${tab}diseaseName${tab}diseaseCurie${tab}pretestprob${tab}posttestprob${tab}compositeLR${tab}${tab}entrezGeneId${tab}variants
rank${tab}diseaseName${tab}diseaseCurie${tab}pretestprob${tab}posttestprob${tab}compositeLR${tab}entrezGeneId${tab}variants
<#list diff as dd>
${dd.rank}${tab}${dd.diseaseName}${tab}${dd.diseaseCurie}${tab}${dd.pretestprob}${tab}${dd.posttestprob}${tab}${dd.compositeLR}${tab}${dd.entrezGeneId}${tab}${dd.varString}
</#list>
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5 changes: 4 additions & 1 deletion pom.xml
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Expand Up @@ -6,7 +6,7 @@
<groupId>org.monarchinitiative.lirical</groupId>
<artifactId>LIRICAL</artifactId>
<packaging>pom</packaging>
<version>2.0.1</version>
<version>2.0.2</version>
<modules>
<module>lirical-core</module>
<module>lirical-io</module>
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<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>3.2.3</version>
<configuration>
<argLine>-Duser.language=en -Duser.region=US</argLine>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
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