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1. spades_with_many_files spades_with_many_files Public

   This code allows you to search for R1.fastq.gz and R2.fastq.gz files present in a directory and start them with spades assemble

   Python

2. raxml-ng-wrapper- raxml-ng-wrapper- Public

   Shell script to use raxml-ng in a directory with several fasta or phylip files. The script has also been described to clean up the outputs and leave only the trees: .bestTree . support.

   Shell

3. uce-assembly-with-trinity uce-assembly-with-trinity Public

   Python Scripts for Assembling ECU's with Trinity: Option to the Phyluce Package

   Python

4. mafft_wapper.sh mafft_wapper.sh Public

   Script Description: MAFFT Wrapper Script This Bash script serves as a wrapper for the Multiple Alignment using Fast Fourier Transform (MAFFT) tool. It automates the process of aligning multiple pro…

   Shell

5. iqtree_wrapper.sh iqtree_wrapper.sh Public

   Script Description: IQ-TREE Wrapper Script This Bash script acts as a wrapper for IQ-TREE, facilitating the batch processing of multiple protein sequence files for phylogenetic tree construction. T…

   Shell

6. fast_dump.py fast_dump.py Public

   The script downloads SRA files and generates fastq files for specified SRA numbers corresponding to different species.

   Python