primates-2020

work on primate genome analysis

hubs

Hubs are:

• /public/groups/cgl/cat/primates_evan/out/assemblyHub/hub.txt
• /public/groups/cgl/cat/primates_evan/out/trackHub//hub.txt

Source for text files is in:

• hub has the source for assembly hub for all genomes
• trackHub is the trackHub to use against native UCSC assemblies (rheMac10)

The hubs metadata files are copied to the live hub/Makefile. Data files must be manually linked:

cd ..../assemblyHub/Rhesus/
find . -type f -not -name '*.txt' | cpio -pduml ../../trackHub/rheMac10