changed interval

UMCUGenetics · Feb 27, 2024 · a10b504 · a10b504
1 parent 926aa06
commit a10b504
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/nextflow.config b/nextflow.config
@@ -32,7 +32,7 @@ params {
     genome_fasta = '/hpc/diaggen/data/databases/ref_genomes/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta'
     genome_dict = '/hpc/diaggen/data/databases/ref_genomes/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.dict'
     bwa_index = '/hpc/diaggen/data/databases/ref_genomes/Homo_sapiens.GRCh37.GATK.illumina/'
-    intervals = '/hpc/diaggen/projects/Fingerprint_Nimagen/Tracks/nimagen_sites_hg19.bed'
+    intervals = '/hpc/diaggen/projects/Fingerprint_Nimagen/Tracks/nimagen_hg19.interval_list'
     dbsnp = '//hpc/diaggen/data/databases/GATK_resource_bundle/b37/dbsnp_138.b37.vcf.gz'
 
     // Input options