Release 24.1

HISTORY.md

@@ -1,8 +1,8 @@
 # History
 
-## v24.1 (TBD)
+## v24.1
 
-*Released on 2024-XX-XX.*
+*Released on 2024-11-25.*
 
 * Added BMDS Desktop mode for execution
 * Added support for Multitumor modeling

bmds_ui/__init__.py

@@ -1,7 +1,7 @@
 import os
 import sys
 
-__version__ = "24.1a6"
+__version__ = "24.1"
 
 
 def manage():

bmds_ui/desktop/actions.py

@@ -133,15 +133,14 @@ def stop(self):
 
 
 def get_latest_version(package: str) -> tuple[datetime, Version]:
-    raise ValueError("TODO - implement when we're clear to release")
     url = f"https://pypi.org/pypi/{package}/json"
     try:
         resp = urlopen(url, timeout=5)  # noqa: S310
-    except URLError:
+    except URLError as err:
         parsed = urlparse(url)
         raise ValueError(
             f"Could not check latest version; unable to reach {parsed.scheme}://{parsed.netloc}."
-        ) from URLError
+        ) from err
     data = json.loads(resp.read().decode("utf-8"))
     latest_str = list(data["releases"].keys())[-1]
     upload_time = data["releases"][latest_str][0]["upload_time"]

bmds_ui/desktop/content.py

@@ -19,7 +19,7 @@ def version_check(check: bool = False) -> str:
         return "**Status:** Ready to check - this requires an internet connection."
     current = get_installed_version()
     try:
-        latest_date, latest = get_latest_version("bmds")  # TODO - change to bmds-ui
+        latest_date, latest = get_latest_version("bmds-ui")
     except ValueError as err:
         return str(err)
     try:

pyproject.toml

@@ -2,7 +2,7 @@
 name = "bmds_ui"
 license = {text = "MIT License"}
 authors = [
-  {name = "BMDS development team"},
+  {name = "BMDS Development Team"},
   {name = "Andy Shapiro", email = "[email protected]"}
 ]
 readme = "README.md"
@@ -24,7 +24,7 @@ classifiers = [
 requires-python = ">=3.11"
 dependencies = [
   # pybmds
-  "pybmds==24.1a6",
+  "pybmds==24.1",
 
   # website
   "Django~=5.1.2",

tests/data/cassettes/tests.desktop.test_actions/test_get_latest_version.yaml

@@ -7,9 +7,9 @@ interactions:
       Host:
       - pypi.org
       User-Agent:
-      - Python-urllib/3.11
+      - Python-urllib/3.12
     method: GET
-    uri: https://pypi.org/pypi/bmds/json
+    uri: https://pypi.org/pypi/bmds-ui/json
   response:
     body:
       string: '{"info":{"author":"Andy Shapiro","author_email":"[email protected]","bugtrack_url":null,"classifiers":["Intended

tests/data/cassettes/tests.desktop.test_app/TestApplication.test_update_check.yaml

@@ -7,9 +7,9 @@ interactions:
       Host:
       - pypi.org
       User-Agent:
-      - Python-urllib/3.11
+      - Python-urllib/3.12
     method: GET
-    uri: https://pypi.org/pypi/bmds/json
+    uri: https://pypi.org/pypi/bmds-ui/json
   response:
     body:
       string: '{"info":{"author":"Andy Shapiro","author_email":"[email protected]","bugtrack_url":null,"classifiers":["Intended

tests/data/db.yaml

@@ -1959,8 +1959,8 @@
       analysis_id: cc3ca355-a57a-4fba-9dc3-99657562df68
       analysis_schema_version: '1.1'
       bmds_python_version:
-        dll: 24.1a6
-        python: 24.1a6
+        dll: "24.1"
+        python: "24.1"
       bmds_ui_version: 9434971c
       outputs:
       - bayesian:
@@ -3419,8 +3419,8 @@
             model_index: null
             notes: ''
           version:
-            dll: 24.1a6
-            python: 24.1a6
+            dll: "24.1"
+            python: "24.1"
         dataset_index: 0
         error: null
         frequentist:
@@ -5135,8 +5135,8 @@
             model_index: null
             notes: ''
           version:
-            dll: 24.1a6
-            python: 24.1a6
+            dll: "24.1"
+            python: "24.1"
         option_index: 0
     starred: false
     started: 2024-05-14 19:18:13.442351+00:00
@@ -6837,8 +6837,8 @@
             - 10.0
             - 19.0
           version:
-            dll: 24.1a6
-            python: 24.1a6
+            dll: "24.1"
+            python: "24.1"
           selected:
             notes: ''
             model_index: null
@@ -6999,10 +6999,10 @@
         option_index: 0
         dataset_index: 0
       analysis_id: 432a6083-f9aa-4de2-a71f-a6488b4c5bf1
-      bmds_ui_version: 24.1a6
+      bmds_ui_version: "24.1"
       bmds_python_version:
-        dll: 24.1a6
-        python: 24.1a6
+        dll: "24.1"
+        python: "24.1"
       analysis_schema_version: '1.1'
     errors: []
     created: 2024-08-22 15:46:25.966993+00:00
@@ -7942,8 +7942,8 @@
               - 8.24
               - 9.23
           version:
-            dll: 24.1a6
-            python: 24.1a6
+            dll: "24.1"
+            python: "24.1"
           selected:
             notes: User selected best fitting model
             model_index: 0
@@ -8100,10 +8100,10 @@
         option_index: 0
         dataset_index: 0
       analysis_id: cfe458aa-2313-44c0-9346-f4931567bef0
-      bmds_ui_version: 24.1a6
+      bmds_ui_version: "24.1"
       bmds_python_version:
-        dll: 24.1a6
-        python: 24.1a6
+        dll: "24.1"
+        python: "24.1"
       analysis_schema_version: '1.1'
     errors: []
     created: 2024-08-22 15:45:08.929260+00:00
@@ -9832,8 +9832,8 @@
             - 0
             - 0
           version:
-            dll: 24.1a6
-            python: 24.1a6
+            dll: "24.1"
+            python: "24.1"
           datasets:
           - ns:
             - 20.0
@@ -9936,10 +9936,10 @@
         option_index: 0
         dataset_index: -1
       analysis_id: 2f86f324-911d-4194-97d1-fc7c3f5d0c72
-      bmds_ui_version: 24.1a6
+      bmds_ui_version: "24.1"
       bmds_python_version:
-        dll: 24.1a6
-        python: 24.1a6
+        dll: "24.1"
+        python: "24.1"
       analysis_schema_version: '1.1'
     errors: []
     created: 2024-08-22 15:26:02.720355+00:00
@@ -13096,8 +13096,8 @@
             - 8.0
             - 10.0
           version:
-            dll: 24.1a6
-            python: 24.1a6
+            dll: "24.1"
+            python: "24.1"
           selected:
             notes: User selected best fitting model
             model_index: 1
@@ -13266,10 +13266,10 @@
         option_index: 0
         dataset_index: 0
       analysis_id: 4459f728-05f7-4057-a27c-174822a0313d
-      bmds_ui_version: 24.1a6
+      bmds_ui_version: "24.1"
       bmds_python_version:
-        dll: 24.1a6
-        python: 24.1a6
+        dll: "24.1"
+        python: "24.1"
       analysis_schema_version: '1.1'
     errors: []
     created: 2024-08-22 15:25:20.345600+00:00
@@ -14368,8 +14368,8 @@
             - 15.1564
             - 15.0368
           version:
-            dll: 24.1a6
-            python: 24.1a6
+            dll: "24.1"
+            python: "24.1"
           selected:
             notes: User selected best fitting model
             model_index: 0
@@ -14526,10 +14526,10 @@
         option_index: 0
         dataset_index: 0
       analysis_id: 09c09d22-2e1a-413c-b350-6b19969f6533
-      bmds_ui_version: 24.1a6
+      bmds_ui_version: "24.1"
       bmds_python_version:
-        dll: 24.1a6
-        python: 24.1a6
+        dll: "24.1"
+        python: "24.1"
       analysis_schema_version: '1.1'
     errors: []
     created: 2024-08-22 15:23:53.050405+00:00
@@ -14763,7 +14763,6 @@
     content_type: 1
     subject: Homepage
     content:
-      title: <h1>Welcome to BMDS online.</h1>
       template: "<div class=\"row\">\n    <div class=\"col-sm-12\">\n        <h1>Welcome
         to BMDS online.</h1>\n    </div>\n</div>\n<div class=\"row\">\n    <div class=\"col-md-8\">\n
         \       <div class=\"col-lg\">\n            <p>\n                This web-application

tests/desktop/test_actions.py

@@ -7,9 +7,8 @@
 
 
 @pytest.mark.vcr
-@pytest.mark.xfail(reason="Turn back on when we're ready for release")
 def test_get_latest_version():
-    uploaded, version = actions.get_latest_version("bmds")  # TODO - change to bmds-ui
+    uploaded, version = actions.get_latest_version("bmds-ui")
     assert isinstance(uploaded, datetime)
     assert isinstance(version, Version)