2.2 Compile SV Impacts (as needed) #9
Workflow file for this run
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| ### Overwrite FrEDI data with past data | |
| name: Compile SV Impacts | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| svSectors: | |
| type: choice | |
| description: Which SV impact sectors to update | |
| options: | |
| - Air Quality - Childhood Asthma | |
| - Air Quality - Premature Mortality | |
| - Labor | |
| - Extreme Temperature | |
| - Roads | |
| - Transportation Impacts from High Tide Flooding | |
| - Coastal Properties | |
| branch_name: | |
| type: string | |
| description: Which FrEDI Package branch do you want to use? | |
| jobs: | |
| compile_data: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| name: Process Data | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Send sector selection | |
| run: | | |
| echo "${{ github.event.inputs.svSectors }}" | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setup R package dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache: true | |
| cache-version: 1 | |
| packages: | | |
| any::tidyverse | |
| any::ggpubr | |
| any::openxlsx | |
| any::devtools | |
| - name: Install FrEDI | |
| run: | | |
| Rscript -e 'devtools::install_github( | |
| repo = "https://github.com/USEPA/FrEDI", | |
| ref = "${{ github.event.inputs.branch_name }}", | |
| subdir = "FrEDI", | |
| dependencies = FALSE, | |
| upgrade = "never", | |
| force = TRUE, | |
| type = "source" | |
| )' | |
| - name: Configure SV data | |
| run: | | |
| Rscript -e ' | |
| source("./scripts/update_svImpactLists.R") | |
| fpath1 <- "." | |
| fpath1 |> print() | |
| sectors1 <- c("${{ github.event.inputs.svSectors }}") | |
| list1 <- update_svImpactLists( | |
| fpath0 = fpath1, | |
| sectors = sectors1, | |
| save = T, | |
| return = F | |
| ) | |
| ' | |
| - name: Commit results | |
| run: | | |
| git config --local core.autocrlf false | |
| git config --local user.email "${{ github.actor }}@users.noreply.github.com" | |
| git config --local user.name "${{ github.actor }}" | |
| git add data/sv/impactsLists/**.rds | |
| git pull origin ${{ github.head_ref }} --autostash --rebase -X ours | |
| git commit -a -m "Updated SV FrEDI impact lists for ${{ github.event.inputs.svSectors }}" | |
| git push |