3. Update FrEDI Data (if tests passed) #43

	### Overwrite FrEDI data with past data
	# on:
	# workflow_run:
	# workflows: ["Compile FrEDI Data"]
	name: 3. Update FrEDI Data (if tests passed)

	on:
	workflow_dispatch:
	inputs:
	passed_tests:
	type: choice
	description: Did data pass tests?
	required: true
	options:
	- no
	- yes


	jobs:
	# This workflow contains a single job called "build"
	update_data:
	runs-on: ubuntu-latest
	name: Update Data
	steps:
	- name: Checkout
	uses: actions/checkout@v3

	- name: Setup R
	uses: r-lib/actions/setup-r@v2

	- name: Setup R package dependencies
	uses: r-lib/actions/setup-r-dependencies@v2
	with:
	cache: true
	cache-version: 1
	packages: \|
	any::tidyverse
	any::ggpubr
	any::openxlsx
	any::devtools
	any::admisc

	- name: Send test status
	run: echo "${{ github.event.inputs.passed_tests }}"

	- name: Update Data
	if: \|
	github.event.inputs.passed_tests == 'true'
	run: \|
	git rm data/sysdata.rda
	cp data/tmp_sysdata.rda data/sysdata.rda

	- name: Add SV Data to sysdata
	if: \|
	github.event.inputs.passed_tests == 'true'
	run: \|
	Rscript -e '
	pPath0 <- "."
	sPath0 <- "./scripts/add_svData_to_sysdata.R"
	sPath0 \|> source()
	add_svData_to_sysdata(projectDir = pPath0, save = T)
	'
	- name: Commit results
	if: \|
	github.event.inputs.passed_tests == 'true'
	run: \|
	git config --local core.autocrlf false
	git config --local user.email "${{ github.actor }}@users.noreply.github.com"
	git config --local user.name "${{ github.actor }}"
	git rm data/tmp_sysdata.rda
	git add data/*.rda
	git pull origin ${{ github.head_ref }} --autostash --rebase -X ours
	git commit -a -m "Updated sysdata and added SV data to sysdata"
	git push

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