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V1.1.0 release to CRAN.#41

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rachmaninoffpk merged 193 commits intomasterUSEPA/ctxR:masterfrom devUSEPA/ctxR:devCopy head branch name to clipboardJan 13, 2025

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Commits on Jul 16, 2024

• Adjusted vignette index to set specific vignette ordering.

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• Added example of batch search for chemical details. Adjusted header wording for greater clarity.

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• Added function exports for new functions.

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• Updated news with new functions and related developments in the associated vignette.

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• Initial commit.

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• Fixed missing logic error by replacing 'examples' with 'examplesIf' in Roxygen documentation.

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• Updated regex to catch additional strings relating to 'exposure' and 'staging' path names.

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• Initial commit.

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• Added get_httk_data(), get_general_exposure_prediction(), and get_demographic_exposure_prediction() functions. Also added null_to_na() helper function.

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• Added get_httk_data_batch(), get_general_exposure_prediction_batch(), and get_demographic_exposure_prediction_batch() functions. Corrected errors in example logic in documentation.

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• Added examples for the get_httk_data(), get_general_exposure_prediction(), and get_demographic_Exposure_prediction() functions. Expanded exposition on batch functions.

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• Added tests for get_httk_data_batch(), get_general_exposure_prediction_batch(), and get_demographic_exposure_prediction_batch() functions.

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• Added tests for get_httk_data(), get_general_exposure_prediction(), and get_demographic_exposure_prediction() functions.

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• Reran requests and recorded new responses for tests.

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Commits on Jul 18, 2024

• Fixed recursive error in parameter default value.

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• Fixed recrusive error caused by parameter default value.

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• Added in functionality to return information in http status code 400 responses.

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• Adjusted tests based on new return behavior.

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• Removed debugging return() line.

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Commits on Jul 19, 2024

• Updated news to reflect changes in function behavior.

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• Updated functions and documentation to reflect new function behavior.

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• Updated function documentation to reflect new behavior. Added Author field to attribute @kisaacs1 for contributions that improved function behavior.

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Commits on Jul 22, 2024

• Merge pull request #8 from USEPA/4-update-chemical-api-batch-search-vignette-example

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• Merge pull request #9 from USEPA/5-update-order-of-vignettes-on-cran

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Commits on Jul 24, 2024

• Changed Server parameter from staging to live address.

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• Updated documentation to reflect live address rather than staging address for API endpoint.

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• Ran tests and recorded new requests and responses to reflect changes in API address.

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• Updated requests and response recordings to reflect changes in API endpoint address.

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• Added CRAN version and monthly download badges.

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Commits on Jul 25, 2024

• reformatting with new css plus new hex

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• minor edits

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Commits on Jul 26, 2024

• Added package used in vignette construction.

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• Merge branch '13-update-readme-to-include-badges' of https://github.com/USEPA/ctxR into 13-update-readme-to-include-badges

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Commits on Jul 29, 2024

• delete extra css file

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Commits on Jul 31, 2024

• reduce vignettes size, keep main vignette formatting

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• Added package to suggests for vignette building.

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Commits on Aug 5, 2024

• Initial commit.

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• Added pkgdown website address.

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• Added for pkgdown website construction.

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• Added to ignore pkgdown website components.

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• Initial commit.

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• Added articles subdirectory of vignettes subdirectory.

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Commits on Aug 6, 2024

• Initial commit.

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• Initial commit.

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• Added docs subdirectory.

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• Initial commit.

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• Adjusted headers and knitting information.

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Commits on Aug 9, 2024

• Initial commit.

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• Removed enhanced intro vignette and related files.

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• Removed enhanced intro vignette and related files.

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• Removed enhanced intro vignette.

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Commits on Aug 13, 2024

• Handles querying an m4id that does not exist.

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• Removed logic that was unnecessary.

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• Merge pull request #16 from USEPA/15-get_bioactivity_details-using-m4id-error-with-non-existing-m4id

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• Handle case in which column is assigned value NA and skip unnesting of that column.

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Commits on Aug 14, 2024

• Merge pull request #18 from USEPA/17-get_bioactivity_details-errors-when-mc6param-field-is-null

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Commits on Aug 15, 2024

• Updated hex symbol.

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• Initial commit.

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• Updated hex logo and moved it earlier in the document.

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• Adjusted hex logo location to avoid horizontal line overlap.

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• Deleted old hex logo and renamed new hex logo.

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Commits on Aug 16, 2024

• Fixed pathname.

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• Compressed image to save space.

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• Compressed images to save space.

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• Merge pull request #14 from USEPA/13-update-readme-to-include-badges

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• Removed library() call.

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• Merge branch 'dev' into 6-add-new-functions-for-exposure-api-endpoints

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• Merge pull request #10 from USEPA/6-add-new-functions-for-exposure-api-endpoints

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• Merge branch 'dev' into 11-adjust-string-search-functions-for-different-http-status-codes

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• Added in url decoding to make returned data more understandable.

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Commits on Aug 19, 2024

• Merge pull request #12 from USEPA/11-adjust-string-search-functions-for-different-http-status-codes

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Commits on Aug 20, 2024

• Removed docs subdirectory.

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• Added docs subdirectory resulting from pkgdown site deployment.

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• Merge branch 'dev' into 3-create-pkgdown-website

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• Merge pull request #20 from USEPA/3-create-pkgdown-website

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Commits on Aug 21, 2024

• Incrememnted version number to indicate development.

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• Add development option to create release and development pkgdown websites.

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• Added space after running usethis::use_pkgdown_github_pages().

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• Added release and development version website urls.

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• Removed main and added dev branch to trigger github actions.

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Commits on Aug 22, 2024

• Added @keywords internal to suppress documentation of old funtions and helper functions that should remain internal.

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Commits on Aug 26, 2024

• Removed code for non-exported legacy functions.

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• Removed documentation of deleted functions.

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• Intial commit.

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• Deleted non-exported legacy functions. Added documentation for a helper funcgion create_hazard_data.table().

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• Removed documentation of deleted functions.

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Commits on Aug 27, 2024

• Added parameter to helper function generate_ranges for limit.

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Commits on Aug 28, 2024

• Added function export.

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• Added new function check_existence_by_dtxsid().

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• Initial commit.

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• Added tests for function check_existence_by_dtxsid().

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• Reran test to record new responses.

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• Initial commit.

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• Added subsection for new endpoint check_existence_by_dtxsid().

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Commits on Aug 29, 2024

• Added function export for check_existence_by_dtxsid_batch().

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• Added function check_existence_by_dtxsid_batch(). Commented out print statements in chemical_Equal_batch() function.

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• Initial commit.

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• Reran tests to capture updated recordings.

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• Adjusted hex logo position. Added example of batch search.

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• Reran tests to capture updated recordings.

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• Updated NEWS.md to include new functions.

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• Merge pull request #26 from USEPA/25-limits-for-batch-requests-not-correct-against-api-documentation

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• Merge pull request #24 from USEPA/23-suppress-old-functionhelper-function-documentation

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• Added package rmdformats to suggests.

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Commits on Aug 30, 2024

• Removed commented out lines.

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Commits on Sep 3, 2024

• Merge pull request #22 from USEPA/21-bump-version-number-and-create-development-pkgdown-website

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Commits on Sep 12, 2024

• Merge branch 'dev' into 27-add-functions-to-wrap-pubchem-link-to-ghs-classification

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• Merge pull request #28 from USEPA/27-add-functions-to-wrap-pubchem-link-to-ghs-classification

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Commits on Sep 16, 2024

• Added function exports for get_all_list_types(), get_chemicals_in_list_contain(), get_chemicals_in_list_contain_batch(),

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• Added functions get_chemicals_in_list_start_batch(), get_chemicals_in_list_exact_batch(), get_chemicals_in_list_contain_batch(), and updated from GET to POST get_chemical_synonym_batch().

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• Added new parameter and documentation.

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• Added functions get_all_list_types(), get_chemicals_in_list_start(), get_chemicals_in_list_exact(), get_chemicals_in_list_contain(). Added parameter gsid to function `get_chemical_image()…

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• Initial commit.

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• Reran tests to capture and update recordings.

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• Reran tests to capture updated recordings.

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• Added new tests for new functions.

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• Updated documentation with new parameter and default value.

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• Added examples for new functions.

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• Added new parameters, default values, and updated documentation.

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• Reran test to capture updated recordings.

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• Reran tests to capture updated recordings.

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Commits on Sep 24, 2024

• Changed list example to produce a non-trivial output. Also added examples and exposition for visualizing chemical image files.

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• Merge pull request #30 from USEPA/29-add-and-update-functions-for-chemical-domain-endpoints

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Commits on Oct 31, 2024

• Updated error message for invalid API key to reflect the input API key value.

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Commits on Nov 4, 2024

• Adjusted API key error.

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• Fixed broken example (case sensitive).

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• Reran requests and recorded new responses for tests with updated functions.

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• Added in pauses to prevent flooding API with requests. Commented out tests no longer relevant.

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• Adjusted API key errors.

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• Reran requests and recorded new responses for tests for updated functions.

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• Commented out old tests.

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• Adjusted API key errors.

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• Commented out old tests.

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• Reran requests and recorded new responses to test of adjusted funcitons.

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• Adjusted API key errors.

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Commits on Nov 5, 2024

• Updated API key errors.

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Commits on Nov 7, 2024

• Merge pull request #33 from USEPA/32-if-user-inputs-an-invalid-api-key-it-should-return-the-header-titledetail-when-requesting

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Commits on Nov 8, 2024

• Updated API key check with new helper function.

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• Added API key check helper function.

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• Initial commit.

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• Added API key explicitly.

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• Reran tests to record updated responses.

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• Added environment variable access for CTX_API_KEY for github actions to run properly.

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• Added in API key call.

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• Moved env variable call.

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• Moved env variable call.

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• Set env variable for CTX_API_KEY.

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• Set env variable.

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• Set api key.

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• Set API key.

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• Set api key.

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• Set env variable.

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• Attach API key.

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• Merge pull request #37 from USEPA/36-prepare-for-cran-release-110

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