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DOCKER_IMAGE=uwhackweek/template |
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name: CI | ||
on: | ||
push: | ||
branches: | ||
- main | ||
paths-ignore: | ||
- 'LICENSE' | ||
- 'README.md' | ||
- '.gitignore' | ||
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||
jobs: | ||
build-image-and-push: | ||
runs-on: ubuntu-20.04 | ||
steps: | ||
- name: Checkout Repo | ||
uses: actions/checkout@v2 | ||
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||
- name: Set Docker Image Name Environment Variable | ||
run: cat .env >> $GITHUB_ENV | ||
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- name: Get CalenderVersion UTC Date | ||
id: calver | ||
run: echo "::set-output name=version::$(date +'%Y.%m.%d')" | ||
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- name: Build and Push to DockerHub | ||
env: | ||
DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} | ||
if: env.DOCKER_PASSWORD != '' | ||
uses: jupyterhub/repo2docker-action@master | ||
with: | ||
DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} | ||
DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} | ||
IMAGE_NAME: ${{ env.DOCKER_IMAGE }} | ||
ADDITIONAL_TAG: ${{ steps.calver.outputs.version }} | ||
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- name: Also Push To quay.io | ||
env: | ||
QUAY_PASSWORD: ${{ secrets.QUAY_PASSWORD }} | ||
if: env.QUAY_PASSWORD != '' | ||
id: push-to-quay | ||
uses: redhat-actions/push-to-registry@v2 | ||
with: | ||
image: ${{ env.DOCKER_IMAGE }} | ||
tags: ${{ steps.calver.outputs.version }} | ||
registry: quay.io | ||
username: ${{ secrets.QUAY_USERNAME }} | ||
password: ${{ secrets.QUAY_PASSWORD }} | ||
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- name: Print image url | ||
run: echo "Image pushed to ${{ steps.push-to-quay.outputs.registry-paths }}" | ||
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- name: Report Image Size and Conda Packages | ||
if: always() | ||
run: | | ||
docker images | ||
docker run ${{ env.DOCKER_IMAGE }}:latest conda list --export |
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name: BuildAndTest | ||
on: | ||
pull_request: | ||
branches: | ||
- main | ||
paths-ignore: | ||
- 'LICENSE' | ||
- 'README.md' | ||
- '.gitignore' | ||
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||
jobs: | ||
build-image-without-pushing: | ||
runs-on: ubuntu-20.04 | ||
steps: | ||
- name: Checkout PR | ||
uses: actions/checkout@v2 | ||
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||
- name: Set Docker Image Name Environment Variable | ||
run: cat .env >> $GITHUB_ENV | ||
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- name: Build Only | ||
uses: jupyterhub/repo2docker-action@master | ||
with: | ||
NO_PUSH: 'true' | ||
IMAGE_NAME: ${{ env.DOCKER_IMAGE }} | ||
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- name: Report Image Size and Conda Packages | ||
run: | | ||
docker images | ||
docker run ${{ env.DOCKER_IMAGE }}:latest conda list --export | ||
docker run ${{ env.DOCKER_IMAGE }}:latest conda list --explicit > conda-linux-64.lock | ||
- name: Save package list | ||
uses: actions/upload-artifact@v2 | ||
with: | ||
name: lockfile | ||
path: conda-linux-64.lock | ||
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- name: Commit lockfile | ||
uses: EndBug/add-and-commit@v7 | ||
with: | ||
default_author: github_actions | ||
message: "add conda-lock package list" | ||
add: conda-linux-64.lock |
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name: AddBinderBadge | ||
on: | ||
pull_request_target: | ||
branches: | ||
- main | ||
types: [opened] | ||
paths-ignore: | ||
- 'LICENSE' | ||
- 'README.md' | ||
- '.gitignore' | ||
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||
jobs: | ||
build-image-without-pushing: | ||
runs-on: ubuntu-20.04 | ||
steps: | ||
- name: Checkout PR | ||
uses: actions/checkout@v2 | ||
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- name: Comment on PR with Binder link | ||
uses: actions/github-script@v3 | ||
env: | ||
BRANCH_NAME: ${{ github.event.pull_request.head.ref }} | ||
CONTENT_REPO: ${{ github.event.pull_request.head.repo.full_name }} | ||
with: | ||
github-token: ${{secrets.GITHUB_TOKEN}} | ||
script: | | ||
var BRANCH_NAME = process.env.BRANCH_NAME; | ||
var CONTENT_REPO = process.env.CONTENT_REPO; | ||
github.issues.createComment({ | ||
issue_number: context.issue.number, | ||
owner: context.repo.owner, | ||
repo: context.repo.repo, | ||
body: `[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/${CONTENT_REPO}/${BRANCH_NAME}?urlpath=lab) :point_left: Launch a binder notebook on this branch` | ||
}) |
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name: Rebuild | ||
on: | ||
workflow_dispatch: | ||
branches: | ||
- main | ||
paths-ignore: | ||
- 'LICENSE' | ||
- 'README.md' | ||
- '.gitignore' | ||
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||
jobs: | ||
trigger-build: | ||
runs-on: ubuntu-20.04 | ||
steps: | ||
- name: Checkout Repo | ||
uses: actions/checkout@v2 | ||
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- name: Get CalenderVersion UTC Date | ||
id: calver | ||
run: echo "::set-output name=version::$(date +'%Y.%m.%d')" | ||
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# This file will be overwritten in Pull Request CI Workflow | ||
- name: Update lockfile | ||
run: | | ||
sed -i "1s/.*/#REBUILD/" conda-linux-64.lock | ||
# https://github.com/peter-evans/create-pull-request/blob/main/docs/concepts-guidelines.md#triggering-further-workflow-runs | ||
- name: Create Pull Request | ||
uses: peter-evans/create-pull-request@v3 | ||
with: | ||
title: Rebuild and lock environment (${{ steps.calver.outputs.version }}) | ||
commit-message: "Rebuild ${{ steps.calver.outputs.version }}" | ||
body: | | ||
Manually triggered by ./github/workflows/Rebuild.yml | ||
token: ${{ secrets.PERSONAL_ACCESS_TOKEN }} |
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.DS_Store | ||
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# Byte-compiled / optimized / DLL files | ||
__pycache__/ | ||
*.py[cod] | ||
*$py.class | ||
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# C extensions | ||
*.so | ||
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# Distribution / packaging | ||
.Python | ||
build/ | ||
develop-eggs/ | ||
dist/ | ||
downloads/ | ||
eggs/ | ||
.eggs/ | ||
lib/ | ||
lib64/ | ||
parts/ | ||
sdist/ | ||
var/ | ||
wheels/ | ||
pip-wheel-metadata/ | ||
share/python-wheels/ | ||
*.egg-info/ | ||
.installed.cfg | ||
*.egg | ||
MANIFEST | ||
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# PyInstaller | ||
# Usually these files are written by a python script from a template | ||
# before PyInstaller builds the exe, so as to inject date/other infos into it. | ||
*.manifest | ||
*.spec | ||
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# Installer logs | ||
pip-log.txt | ||
pip-delete-this-directory.txt | ||
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# Unit test / coverage reports | ||
htmlcov/ | ||
.tox/ | ||
.nox/ | ||
.coverage | ||
.coverage.* | ||
.cache | ||
nosetests.xml | ||
coverage.xml | ||
*.cover | ||
*.py,cover | ||
.hypothesis/ | ||
.pytest_cache/ | ||
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# Translations | ||
*.mo | ||
*.pot | ||
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# Django stuff: | ||
*.log | ||
local_settings.py | ||
db.sqlite3 | ||
db.sqlite3-journal | ||
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# Flask stuff: | ||
instance/ | ||
.webassets-cache | ||
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# Scrapy stuff: | ||
.scrapy | ||
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# Sphinx documentation | ||
docs/_build/ | ||
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# PyBuilder | ||
target/ | ||
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# Jupyter Notebook | ||
.ipynb_checkpoints | ||
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# IPython | ||
profile_default/ | ||
ipython_config.py | ||
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# pyenv | ||
.python-version | ||
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# pipenv | ||
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. | ||
# However, in case of collaboration, if having platform-specific dependencies or dependencies | ||
# having no cross-platform support, pipenv may install dependencies that don't work, or not | ||
# install all needed dependencies. | ||
#Pipfile.lock | ||
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow | ||
__pypackages__/ | ||
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# Celery stuff | ||
celerybeat-schedule | ||
celerybeat.pid | ||
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# SageMath parsed files | ||
*.sage.py | ||
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# Environments | ||
.venv | ||
env/ | ||
venv/ | ||
ENV/ | ||
env.bak/ | ||
venv.bak/ | ||
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# Spyder project settings | ||
.spyderproject | ||
.spyproject | ||
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# Rope project settings | ||
.ropeproject | ||
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# mkdocs documentation | ||
/site | ||
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# mypy | ||
.mypy_cache/ | ||
.dmypy.json | ||
dmypy.json | ||
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# Pyre type checker | ||
.pyre/ |
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MIT License | ||
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Copyright (c) 2021 uwhackweek | ||
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Permission is hereby granted, free of charge, to any person obtaining a copy | ||
of this software and associated documentation files (the "Software"), to deal | ||
in the Software without restriction, including without limitation the rights | ||
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | ||
copies of the Software, and to permit persons to whom the Software is | ||
furnished to do so, subject to the following conditions: | ||
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The above copyright notice and this permission notice shall be included in all | ||
copies or substantial portions of the Software. | ||
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | ||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | ||
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | ||
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | ||
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | ||
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE | ||
SOFTWARE. |
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# docker-template | ||
This repository builds a [JupyterHub](https://jupyter.org/hub) environment with Repo2Docker [GitHub Actions CI](https://github.com/jupyterhub/repo2docker-action) | ||
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[![Action Status](https://github.com/uwhackweek/docker-template/workflows/CI/badge.svg)](https://github.com/uwhackweek/docker-template/actions) | ||
[![Docker Pulls](https://img.shields.io/docker/pulls/uwhackweeks/template)](https://hub.docker.com/r/uwhackweeks/template/tags) | ||
[![BinderHub](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/uwhackweek/docker-template/main?urlpath=git-pull?repo=https://github.com/uwhackweek/jupyterbook-template%26amp%3Bbranch=main%26amp%3Burlpath=lab) | ||
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### How to use this template repository | ||
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1. Click 'Use this Template' to create a copy of the configuration under your organization | ||
2. Edit README.md | ||
2. Edit `.env` and `docker-compose.yml` with your container storage `org/repository` | ||
3. Ensure you have [GitHub Secrets](https://docs.github.com/en/actions/reference/encrypted-secrets) for DOCKER_USERNAME and DOCKER_PASSWORD | ||
4. Build with GitHub Actions simply by pushing to GitHub: | ||
* Commits to 'main' branch build image, by git commit sha and 'latest', and push to DockerHub and Quay.io | ||
* Pull Requests trigger image building without pushing to DockerHub | ||
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```bash | ||
git clone https://github.com/uwhackweek/docker-template | ||
cd docker-template | ||
git checkout dev | ||
# make sure dev branch is up-to-date with master | ||
git merge master | ||
# modify environment.yml or other files in binder/ | ||
git commit -a -m "modified binder/environment to my liking" | ||
git push | ||
# go to github.com and create a pull request to merge dev changes into master | ||
``` | ||
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### Pull your image to run a local JupyterLab session | ||
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```bash | ||
docker compose up | ||
# Do things in JupyterLab w/ files in local directory | ||
docker compose down | ||
``` | ||
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### Pull image from respository | ||
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* From [DockerHub](https://hub.docker.com/r/uwhackweeks/template/tags): `docker pull uwhackweek/template:latest` | ||
* From [Quay](https://quay.io/repository/uwhackweek/template?tab=tags): `docker pull quay.io/uwhackweek/template:latest` | ||
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### Point to a specific tagged image in JupyterHub config | ||
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https://zero-to-jupyterhub.readthedocs.io/en/latest/reference/reference.html?highlight=profile_list#singleuser-profilelist |
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vim | ||
wget | ||
git |
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version: "3.9" | ||
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services: | ||
jupyterlab: | ||
image: "uwhackweek/template:latest" | ||
ports: | ||
- "8888:8888" | ||
command: "jupyter lab --ip 0.0.0.0 --no-browser" | ||
volumes: | ||
- ${PWD}:/home/jovyan |
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name: hackweek | ||
channels: | ||
- conda-forge | ||
dependencies: | ||
- ipyleaflet | ||
- jupyter-book=0.10 | ||
- jupyterlab=3 | ||
- jupyter-resource-usage | ||
- sphinxcontrib-bibtex=2 |