Merge pull request #1386 from DWesl/patch-2 #924
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| name: Build and Test | |
| on: | |
| pull_request: | |
| push: | |
| branches: [master] | |
| jobs: | |
| run-serial: | |
| runs-on: ${{ matrix.os }} | |
| #env: | |
| # NO_NET: 1 | |
| strategy: | |
| matrix: | |
| python-version: [ "3.9", "3.10", "3.11", "3.12", "3.13" ] | |
| os: [windows-latest, ubuntu-latest, macos-latest] | |
| platform: [x64, x32] | |
| exclude: | |
| - os: macos-latest | |
| platform: x32 | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-name: TEST | |
| init-shell: bash | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| numpy cython pip setuptools pytest hdf5 libnetcdf cftime zlib certifi typing-extensions | |
| --channel conda-forge | |
| - name: Install netcdf4-python | |
| run: | | |
| export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config | |
| python -m pip install -v -e . --no-deps --no-build-isolation --force-reinstall | |
| - name: Tests | |
| run: | | |
| pytest -s -rxs -v test | |
| run-mpi: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: [ "3.12" ] | |
| os: [ubuntu-latest] | |
| platform: [x64] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-name: TEST | |
| init-shell: bash | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| numpy cython pip pytest openmpi mpi4py hdf5=*=mpi* libnetcdf=*=mpi* cftime zlib certifi typing-extensions | |
| --channel conda-forge | |
| - name: Install netcdf4-python with mpi | |
| run: | | |
| export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" # so setup.py finds nc-config | |
| nc-config --all | |
| python -m pip install -v -e . --no-build-isolation --no-deps --force-reinstall | |
| - name: Tests | |
| run: | | |
| cd test && python run_all.py | |
| cd ../examples | |
| export PATH="${CONDA_PREFIX}/bin:${CONDA_PREFIX}/Library/bin:$PATH" | |
| which mpirun | |
| mpirun --version | |
| mpirun -np 4 --oversubscribe python mpi_example.py # for openmpi | |
| #mpirun -np 4 python mpi_example.py | |
| if [ $? -ne 0 ] ; then | |
| echo "hdf5 mpi test failed!" | |
| exit 1 | |
| else | |
| echo "hdf5 mpi test passed!" | |
| fi |