Fixed memory leak in lsWriteVisualizationMesh and prepared release 1.…

…3.0.
ViennaTools · Oct 6, 2020 · a7dc082 · a7dc082
1 parent 305a8b3
commit a7dc082
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Showing 450 changed files with 7,406 additions and 3,419 deletions.
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -2,7 +2,7 @@ cmake_minimum_required(VERSION 3.4)
 
 project(
   "ViennaLS"
-  VERSION 1.2.0)
+  VERSION 1.3.0)
 
 add_definitions(-DVIENNALS_VERSION=${PROJECT_VERSION})
 

diff --git a/Examples/CMakeLists.txt b/Examples/CMakeLists.txt
@@ -2,6 +2,12 @@ cmake_minimum_required(VERSION 3.4)
 
 project(ViennaLSExamples)
 
+## Enable Clang sanitizer for debug builds
+if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
+  set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -fno-omit-frame-pointer -fsanitize=address" CACHE STRING "")
+  set(CMAKE_EXE_LINKER_FLAGS_DEBUG "${CMAKE_EXE_LINKER_FLAGS_DEBUGS} -fno-omit-frame-pointer -fsanitize=address" CACHE STRING "")
+endif()
+
 MACRO(SUBDIRLIST result curdir)
   FILE(GLOB children RELATIVE ${curdir} ${curdir}/*)
   SET(dirlist "")

diff --git a/Wrapping/pyWrap.cpp b/Wrapping/pyWrap.cpp
@@ -46,6 +46,7 @@
 #include <lsToVoxelMesh.hpp>
 #include <lsVTKReader.hpp>
 #include <lsVTKWriter.hpp>
+#include <lsWriteVisualizationMesh.hpp>
 #include <lsWriter.hpp>
 
 // always use double for python export
@@ -829,4 +830,29 @@ PYBIND11_MODULE(VIENNALS_MODULE_NAME, module) {
       .def("setFileName", &lsWriter<T, D>::setFileName,
            "Set the filename for the output file.")
       .def("apply", &lsWriter<T, D>::apply, "Write to file.");
+
+  // lsWriteVisualizationMesh
+  pybind11::class_<lsWriteVisualizationMesh<T, D>,
+                   lsSmartPointer<lsWriteVisualizationMesh<T, D>>>(
+      module, "lsWriteVisualizationMesh")
+      // constructors
+      .def(pybind11::init(
+          &lsSmartPointer<lsWriteVisualizationMesh<T, D>>::New<>))
+      .def(pybind11::init(&lsSmartPointer<lsWriteVisualizationMesh<T, D>>::New<
+                          lsSmartPointer<lsDomain<T, D>> &>))
+      // methods
+      .def("insertNextLevelSet",
+           &lsWriteVisualizationMesh<T, D>::insertNextLevelSet,
+           "Insert next level set to convert. Bigger level sets wrapping "
+           "smaller ones, should be inserted last.")
+      .def("setFileName", &lsWriteVisualizationMesh<T, D>::setFileName,
+           "Set Name of File to write.")
+      .def("setExtractHullMesh",
+           &lsWriteVisualizationMesh<T, D>::setExtractHullMesh,
+           "Whether to extract a hull mesh. Defaults to false.")
+      .def("setExtractVolumeMesh",
+           &lsWriteVisualizationMesh<T, D>::setExtractVolumeMesh,
+           " Whether to extract a tetra volume mesh. Defaults to true.")
+      .def("apply", &lsWriteVisualizationMesh<T, D>::apply,
+           "Make and write mesh.");
 }
diff --git a/cmake/ViennaLSConfig.cmake.in b/cmake/ViennaLSConfig.cmake.in
@@ -35,7 +35,7 @@ if(@VIENNALS_USE_VTK@)
   endif(NOT VTK_DIR)
   find_package(VTK QUIET)
   if(VTK_FOUND)
-    message(STATUS "Found VTK")
+    #message(STATUS "Found VTK")
     add_compile_definitions(VIENNALS_USE_VTK)
     include(${VTK_USE_FILE})
     # only link needed vtk libraries for static builds

diff --git a/docs/doxygen/html/AirGapDeposition_8cpp-example.html b/docs/doxygen/html/AirGapDeposition_8cpp-example.html
diff --git a/docs/doxygen/html/AirGapDeposition_8cpp.html b/docs/doxygen/html/AirGapDeposition_8cpp.html
@@ -1,9 +1,9 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
 <html xmlns="http://www.w3.org/1999/xhtml">
 <head>
 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
-<meta name="generator" content="Doxygen 1.8.13"/>
+<meta name="generator" content="Doxygen 1.8.16"/>
 <meta name="viewport" content="width=device-width, initial-scale=1"/>
 <title>ViennaLS: Examples/AirGapDeposition/AirGapDeposition.cpp File Reference</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
@@ -14,8 +14,9 @@
 <script type="text/javascript" src="navtreedata.js"></script>
 <script type="text/javascript" src="navtree.js"></script>
 <script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
   $(document).ready(initResizable);
-</script>
+/* @license-end */</script>
 <link href="search/search.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="search/searchdata.js"></script>
 <script type="text/javascript" src="search/search.js"></script>
@@ -37,18 +38,21 @@
 </table>
 </div>
 <!-- end header part -->
-<!-- Generated by Doxygen 1.8.13 -->
+<!-- Generated by Doxygen 1.8.16 -->
 <script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
 var searchBox = new SearchBox("searchBox", "search",false,'Search');
+/* @license-end */
 </script>
 <script type="text/javascript" src="menudata.js"></script>
 <script type="text/javascript" src="menu.js"></script>
 <script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
 $(function() {
   initMenu('',true,false,'search.php','Search');
   $(document).ready(function() { init_search(); });
 });
-</script>
+/* @license-end */</script>
 <div id="main-nav"></div>
 </div><!-- top -->
 <div id="side-nav" class="ui-resizable side-nav-resizable">
@@ -62,7 +66,9 @@
   </div>
 </div>
 <script type="text/javascript">
+/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
 $(document).ready(function(){initNavTree('AirGapDeposition_8cpp.html','');});
+/* @license-end */
 </script>
 <div id="doc-content">
 <!-- window showing the filter options -->
@@ -117,8 +123,9 @@ <h2 class="memtitle"><span class="permalink"><a href="#ae66f6b31b5ad750f1fe042a7
         </tr>
       </table>
 </div><div class="memdoc">
-<dl><dt><b>Examples: </b></dt><dd><a class="el" href="AirGapDeposition_8cpp-example.html#a3">AirGapDeposition.cpp</a>.</dd>
+<dl class="section examples"><dt>Examples</dt><dd><a class="el" href="AirGapDeposition_8cpp-example.html#a3">AirGapDeposition.cpp</a>.</dd>
 </dl>
+
 </div>
 </div>
 </div><!-- contents -->
@@ -129,7 +136,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#ae66f6b31b5ad750f1fe042a7
     <li class="navelem"><a class="el" href="dir_03680f297d755c096b0a1ead13ee12b7.html">Examples</a></li><li class="navelem"><a class="el" href="dir_4ed0eb80ca16f085a9da84a86c7aac74.html">AirGapDeposition</a></li><li class="navelem"><a class="el" href="AirGapDeposition_8cpp.html">AirGapDeposition.cpp</a></li>
     <li class="footer">Generated by
     <a href="http://www.doxygen.org/index.html">
-    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.13 </li>
+    <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.16 </li>
   </ul>
 </div>
 </body>