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Add build-docker-containers.sh script and Dockerfiles for CPU and GPU… #102

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51 changes: 51 additions & 0 deletions .github/workflows/build-push-cpu.yml
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@@ -0,0 +1,51 @@
#
name: Create and publish CPU Docker image

# Configures this workflow to run every time a change is pushed to the branch called `release`.
on:
push:
branches: ['release']
workflow_dispatch:
# Defines two custom environment variables for the workflow. These are used for the Container registry domain, and a name for the Docker image that this workflow builds.
env:
REGISTRY: ghcr.io
IMAGE_NAME: ${{ github.repository }}

# There is a single job in this workflow. It's configured to run on the latest available version of Ubuntu.
jobs:
build-and-push-image:
runs-on: ubuntu-latest
# Sets the permissions granted to the `GITHUB_TOKEN` for the actions in this job.
permissions:
contents: read
packages: write
#
steps:
- name: Delete huge unnecessary tools folder
run: rm -rf /opt/hostedtoolcache
- name: Checkout repository
uses: actions/checkout@v4
# Uses the `docker/login-action` action to log in to the Container registry registry using the account and password that will publish the packages. Once published, the packages are scoped to the account defined here.
- name: Log in to the Container registry
uses: docker/login-action@65b78e6e13532edd9afa3aa52ac7964289d1a9c1
with:
registry: ${{ env.REGISTRY }}
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
# This step uses [docker/metadata-action](https://github.com/docker/metadata-action#about) to extract tags and labels that will be applied to the specified image. The `id` "meta" allows the output of this step to be referenced in a subsequent step. The `images` value provides the base name for the tags and labels.
- name: Extract metadata (tags, labels) for Docker
id: meta
uses: docker/metadata-action@9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7
with:
images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
# This step uses the `docker/build-push-action` action to build the image, based on your repository's `Dockerfile`. If the build succeeds, it pushes the image to GitHub Packages.
# It uses the `context` parameter to define the build's context as the set of files located in the specified path. For more information, see "[Usage](https://github.com/docker/build-push-action#usage)" in the README of the `docker/build-push-action` repository.
# It uses the `tags` and `labels` parameters to tag and label the image with the output from the "meta" step.
- name: Build and push cpu.Docker image
uses: docker/build-push-action@f2a1d5e99d037542a71f64918e516c093c6f3fc4
with:
context: .
file: ./cpu.Dockerfile
push: true
tags: ${{ steps.meta.outputs.tags }}
labels: ${{ steps.meta.outputs.labels }}
51 changes: 51 additions & 0 deletions .github/workflows/build-push-gpu.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,51 @@
#
name: Create and publish GPU Docker image

# Configures this workflow to run every time a change is pushed to the branch called `release`.
on:
push:
branches: ['release']
workflow_dispatch:
# Defines two custom environment variables for the workflow. These are used for the Container registry domain, and a name for the Docker image that this workflow builds.
env:
REGISTRY: ghcr.io
IMAGE_NAME: ${{ github.repository }}

# There is a single job in this workflow. It's configured to run on the latest available version of Ubuntu.
jobs:
build-and-push-image:
runs-on: ubuntu-latest
# Sets the permissions granted to the `GITHUB_TOKEN` for the actions in this job.
permissions:
contents: read
packages: write
#
steps:
- name: Delete huge unnecessary tools folder
run: rm -rf /opt/hostedtoolcache
- name: Checkout repository
uses: actions/checkout@v4
# Uses the `docker/login-action` action to log in to the Container registry registry using the account and password that will publish the packages. Once published, the packages are scoped to the account defined here.
- name: Log in to the Container registry
uses: docker/login-action@65b78e6e13532edd9afa3aa52ac7964289d1a9c1
with:
registry: ${{ env.REGISTRY }}
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
# This step uses [docker/metadata-action](https://github.com/docker/metadata-action#about) to extract tags and labels that will be applied to the specified image. The `id` "meta" allows the output of this step to be referenced in a subsequent step. The `images` value provides the base name for the tags and labels.
- name: Extract metadata (tags, labels) for Docker
id: meta
uses: docker/metadata-action@9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7
with:
images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
# This step uses the `docker/build-push-action` action to build the image, based on your repository's `Dockerfile`. If the build succeeds, it pushes the image to GitHub Packages.
# It uses the `context` parameter to define the build's context as the set of files located in the specified path. For more information, see "[Usage](https://github.com/docker/build-push-action#usage)" in the README of the `docker/build-push-action` repository.
# It uses the `tags` and `labels` parameters to tag and label the image with the output from the "meta" step.
- name: Build and push gpu.Docker image
uses: docker/build-push-action@f2a1d5e99d037542a71f64918e516c093c6f3fc4
with:
context: .
file: ./gpu.Dockerfile
push: true
tags: ${{ steps.meta.outputs.tags }}
labels: ${{ steps.meta.outputs.labels }}
48 changes: 48 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,48 @@ The above results are with marker and nougat setup so they each take ~3GB of VRA

See [below](#benchmarks) for detailed speed and accuracy benchmarks, and instructions on how to run your own benchmarks.

# Quickstart with Docker

The easiest way to get started with Marker is to build the Docker images. There are two options available:

```bash
./build-docker-containers.sh --build

## Prerequisites

- Docker installed on your system.


## Running Marker with Docker

### Convert a single file

To convert a single PDF file to Markdown using Marker with Docker, run the following command:

```bash
docker run -v /path/to/input:/input -v /path/to/output:/output -v /path/to/cache:/app/.cache speeddemonau/marker-gpu single /input/file.pdf /output/file.md [--parallel_factor N] [--max_pages N]
```

- Replace `/path/to/input` with the path to the directory containing your input PDF file.
- Replace `/path/to/output` with the path to the directory where you want the output Markdown file to be saved.
- Replace `/path/to/cache` with the path to a directory for caching.
- Adjust the `--parallel_factor` and `--max_pages` options as needed (see [Convert a single file](#convert-a-single-file) section for details).

### Convert multiple files

To convert multiple PDF files to Markdown using Marker with Docker, run the following command:

```bash
docker run -v /path/to/input:/input -v /path/to/output:/output -v /path/to/cache:/app/.cache speeddemonau/marker-gpu multi /input /output [--workers N] [--max N] [--metadata_file FILE] [--min_length N]
```

- Replace `/path/to/input` with the path to the directory containing your input PDF files.
- Replace `/path/to/output` with the path to the directory where you want the output Markdown files to be saved.
- Replace `/path/to/cache` with the path to a directory for caching.
- Adjust the `--workers`, `--max`, `--metadata_file`, and `--min_length` options as needed (see [Convert multiple files](#convert-multiple-files) section for details).

Make sure to use the appropriate Docker image tag (`speeddemonau/marker-cpu` or `speeddemonau/marker-gpu`) depending on whether you want to run Marker on CPU or GPU.

# Community

[Discord](https://discord.gg//KuZwXNGnfH) is where we discuss future development.
Expand Down Expand Up @@ -149,6 +191,12 @@ MIN_LENGTH=10000 METADATA_FILE=../pdf_meta.json NUM_DEVICES=4 NUM_WORKERS=15 bas

Note that the env variables above are specific to this script, and cannot be set in `local.env`.

# Additional Notes

- The Docker images are built with support for multiple languages. See the `TESSERACT_LANGUAGES` setting in `settings.py` for the list of supported languages or to add your own.
- The GPU image requires a NVIDIA GPU with CUDA support. Make sure you have the NVIDIA Docker runtime installed to use the GPU image.
- The cache directory mounted at `/app/.cache` inside the container is used to store cached data and models. This can help speed up subsequent runs.

# Benchmarks

Benchmarking PDF extraction quality is hard. I've created a test set by finding books and scientific papers that have a pdf version and a latex source. I convert the latex to text, and compare the reference to the output of text extraction methods.
Expand Down
55 changes: 55 additions & 0 deletions build-docker-containers.sh
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@@ -0,0 +1,55 @@
#!/bin/sh

# Function to display help
show_help() {
echo "Usage: $0 [OPTION]"
echo "Options:"
echo " --build Build both GPU and CPU images."
echo " --build gpu Build only the GPU image."
echo " --build cpu Build only the CPU image."
echo " --help Display this help and exit."
echo "If no options are provided, both images are built."
echo "Example usage:"
echo " $0 --build gpu Builds only the GPU image."
}

# Function to build images
build_images() {
if [ "$1" = "gpu" ] || [ -z "$1" ]; then
echo "Building marker-gpu"
docker build -f gpu.Dockerfile -t marker-gpu .
fi
if [ "$1" = "cpu" ] || [ -z "$1" ]; then
echo "Building marker-cpu"
docker build -f cpu.Dockerfile -t marker-cpu .
fi
}

# Main script starts here
case $1 in
--build)
case $2 in
gpu|cpu)
build_images $2
;;
'')
build_images
;;
*)
show_help
exit 1
;;
esac
;;
--help)
show_help
;;
'')
build_images
echo "Done"
;;
*)
show_help
exit 1
;;
esac
69 changes: 69 additions & 0 deletions cpu.Dockerfile
Original file line number Diff line number Diff line change
@@ -0,0 +1,69 @@
FROM python:3.9

# Set the working directory
WORKDIR /app

# set environment variables for poetry
ENV LC_ALL=C.UTF-8
ENV LANG=C.UTF-8
ENV LANGUAGE=C.UTF-8

# Set environment variables for TORCH to use CPU
ENV TORCH_DEVICE=cpu

# Install system requirements
RUN apt-get update && \
apt-get install -y git curl wget unzip apt-transport-https \
ghostscript lsb-release

# Clone the marker repository
RUN git clone https://github.com/VikParuchuri/marker.git .

# create a directory for the app and .cache
RUN mkdir -p /app/.cache

# Set the cache directory
ENV CACHE_DIR=/app/.cache


# Install tesseract 5 (optional)
RUN echo "deb https://notesalexp.org/tesseract-ocr5/$(lsb_release -cs)/ $(lsb_release -cs) main" | tee /etc/apt/sources.list.d/notesalexp.list > /dev/null && \
apt-get update -oAcquire::AllowInsecureRepositories=true && \
apt-get install -y --allow-unauthenticated notesalexp-keyring && \
apt-get update && \
apt-get install -y --allow-unauthenticated tesseract-ocr libtesseract-dev \
libmagic1 ocrmypdf tesseract-ocr-eng tesseract-ocr-deu \
tesseract-ocr-por tesseract-ocr-spa tesseract-ocr-rus \
tesseract-ocr-fra tesseract-ocr-chi-sim tesseract-ocr-jpn \
tesseract-ocr-kor tesseract-ocr-hin

RUN pip install --no-cache-dir --upgrade pip
RUN pip install --no-cache-dir --upgrade setuptools wheel
RUN pip install --no-cache-dir poetry


# Disable virtual env creation by poetry (not needed in Docker)
# and install dependencies based on the lock file without updating
RUN poetry config virtualenvs.create false \
&& poetry lock --no-update \
&& poetry install --no-dev # Exclude development dependencies

RUN poetry remove torch

RUN mkdir -p /app/static

RUN pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu



# Set the tesseract data folder path for Ubuntu 22.04 with tesseract 5
ENV TESSDATA_PREFIX=/usr/share/tesseract-ocr/5/tessdata

# Copy the entrypoint script
COPY entrypoint.sh /entrypoint.sh

# Set the entrypoint
ENTRYPOINT ["/entrypoint.sh"]

# Set the default command
CMD ["bash"]
71 changes: 71 additions & 0 deletions entrypoint.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,71 @@
#!/bin/bash

# Check if the correct number of arguments is provided
if [ "$#" -lt 2 ]; then
echo "Usage: docker run -v /path/to/input:/input -v /path/to/output:/output -v /path/to/cache:/app/.cache image_name [COMMAND] [ARGS]"
echo ""
echo "Commands:"
echo " single /input/file.pdf /output/file.md [OPTIONS]"
echo " Convert a single file"
echo " Usage: docker run -v /path/to/input:/input -v /path/to/output:/output -v /path/to/cache:/app/.cache image_name single /input/file.pdf /output/file.md [--parallel_factor N] [--max_pages N]"
echo " Options:"
echo " --parallel_factor N Increase batch size and parallel OCR workers by N (default: 1)"
echo " --max_pages N Maximum number of pages to process (default: all)"
echo ""
echo " multi /input /output [OPTIONS]"
echo " Convert multiple files"
echo " Usage: docker run -v /path/to/input:/input -v /path/to/output:/output -v /path/to/cache:/app/.cache image_name multi /input /output [--workers N] [--max N] [--metadata_file FILE] [--min_length N]"
echo " Options:"
echo " --workers N Number of PDFs to convert in parallel (default: 1)"
echo " --max N Maximum number of PDFs to convert (default: all)"
echo " --metadata_file FILE Path to JSON file with per-PDF metadata (default: none)"
echo " --min_length N Minimum number of characters to extract before processing (default: 0)"
exit 1
fi

# Get the command
COMMAND=$1
shift

# Activate the poetry shell
poetry shell

# Run the specified command with the provided arguments
case $COMMAND in
single)
# Check if the correct number of arguments is provided
if [ "$#" -lt 2 ]; then
echo "Usage: docker run -v /path/to/input:/input -v /path/to/output:/output -v /path/to/cache:/app/.cache image_name single /input/file.pdf /output/file.md [--parallel_factor N] [--max_pages N]"
exit 1
fi

# Set the input file and output file from the arguments
INPUT_FILE=$1
OUTPUT_FILE=$2
shift 2

# Run the convert_single.py script with the provided arguments
poetry run python /app/convert_single.py "$INPUT_FILE" "$OUTPUT_FILE" "$@"
;;

multi)
# Check if the correct number of arguments is provided
if [ "$#" -lt 2 ]; then
echo "Usage: docker run -v /path/to/input:/input -v /path/to/output:/output -v /path/to/cache:/app/.cache image_name multi /input /output [--workers N] [--max N] [--metadata_file FILE] [--min_length N]"
exit 1
fi

# Set the input and output directories from the arguments
INPUT_DIR=$1
OUTPUT_DIR=$2
shift 2

# Run the convert.py script with the provided arguments
poetry run python /app/convert.py "$INPUT_DIR" "$OUTPUT_DIR" "$@"
;;

*)
echo "Unknown command: $COMMAND"
exit 1
;;
esac
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