Example command to run the pipeline:
nextflow run main.nf --vcf_file testdata/vcf_samples.csv --pheno SMOKER --pheno_file testdata/all.doid.count.csv
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Performs a PheWAS analysis & generates a Manhattan plot using the PheWAS R package
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- Nextflow 53.4%
- R 38.9%
- Python 4.9%
- Dockerfile 2.8%