This repository contains the code and data of the experiments performed in our manuscript, "PyKleeBarcode: Enabling representation of the whole animal kingdom in information space".

It showcases pyKleeBarcode, a software designed to facilitate the analysis of genetic diversity of large complements of aligned DNA sequences.

The bash scripts (numeroted 01 to 04) generate indicator vectors and structure matrices for the different experiment. Scripts 01 to 03 should take around 1 minute each to run. Script 04 should take around 1 hour because of the random replicates.

The jupyter notebooks (numeroted 05 to 07) use the generate indicator vectors and structure matrices to create the figures of our manuscript, and should take a couple of minutes each to run.