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recPhyloXML

PhyloXML inspired format to represent reconciled gene trees (a reconciled gene tree is a tree whose node have been annotated with events that explain its evolution inside a species tree).

For details on the format, examples and an online visualization generator, see our website : http://phylariane.univ-lyon1.fr/recphyloxml/

this git contains several directories:

testFiles/ : contains various examples of the format and data to test the various scripts

python/ : code in python for the manipulation of files in the recPhyloXML format

cpp/ : code in c++ to read/write recPhyloXML files