2.format_training_data/format_training_data.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Import libraries"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pathlib\n",
    "import pandas as pd\n",
    "import numpy as np\n",
    "\n",
    "import sys\n",
    "sys.path.append(\"../utils\")\n",
    "from load_utils import compile_mitocheck_batch_data\n",
    "from training_data_utils import get_labeled_cells"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Set save directory"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "results_dir = pathlib.Path(\"results/\")\n",
    "results_dir.mkdir(exist_ok=True, parents=True)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Compile, Format, Save Training Data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Compiling data for dataset type ic\n",
      "Loading data from ../1.idr_streams/extracted_features/training_data__ic/merged_features...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_23.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_2.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_26.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_6.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_9.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_27.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_0.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_14.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_5.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_24.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_19.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_10.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_21.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_22.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_17.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_16.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_7.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_13.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_15.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_1.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_3.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_8.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_4.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_18.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_12.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_25.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_20.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__ic/merged_features/batch_11.csv.gz...\n",
      "Training data has (64513, 1449)\n",
      "No feature data derived for cell at: LT0100_03, 93, 84, 241, 710\n",
      "No feature data derived for cell at: LT0014_12, 159, 70, 911, 678\n",
      "No feature data derived for cell at: LT0043_48, 166, 44, 296, 320\n",
      "No feature data derived for cell at: LT0043_48, 166, 71, 279, 313\n",
      "No feature data derived for cell at: LT0066_19, 287, 48, 1137, 693\n",
      "No feature data derived for cell at: LT0066_19, 287, 48, 773, 103\n",
      "No feature data derived for cell at: LT0066_19, 287, 48, 471, 480\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 300, 522\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 701, 156\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 1029, 548\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 1138, 689\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 470, 779\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 958, 105\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 719, 347\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 826, 373\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 1229, 384\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 587, 445\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 719, 345\n",
      "No feature data derived for cell at: LT0066_19, 287, 93, 668, 25\n",
      "No feature data derived for cell at: LT0066_19, 287, 93, 517, 292\n",
      "No feature data derived for cell at: LT0084_46, 3, 56, 1242, 633\n",
      "No feature data derived for cell at: LT0091_30, 169, 43, 1243, 869\n",
      "No feature data derived for cell at: LT0091_30, 169, 43, 787, 603\n",
      "No feature data derived for cell at: LT0157_04, 5, 47, 1278, 951\n",
      "No feature data derived for cell at: LT0157_04, 5, 61, 373, 912\n",
      "No feature data derived for cell at: LT0157_04, 5, 78, 833, 423\n",
      "No feature data derived for cell at: LT0003_40, 149, 83, 943, 381\n",
      "No feature data derived for cell at: LT0013_42, 107, 28, 208, 555\n",
      "No feature data derived for cell at: LT0015_22, 69, 89, 1248, 921\n",
      "No feature data derived for cell at: LT0015_22, 69, 89, 686, 367\n",
      "No feature data derived for cell at: LT0019_06, 140, 70, 423, 374\n",
      "No feature data derived for cell at: LT0019_06, 140, 83, 965, 580\n",
      "No feature data derived for cell at: LT0026_22, 258, 67, 1010, 442\n",
      "No feature data derived for cell at: LT0039_45, 281, 26, 988, 298\n",
      "No feature data derived for cell at: LT0039_45, 281, 27, 989, 308\n",
      "No feature data derived for cell at: LT0041_32, 132, 74, 904, 154\n",
      "No feature data derived for cell at: LT0048_14, 335, 29, 726, 693\n",
      "No feature data derived for cell at: LT0048_14, 335, 29, 941, 166\n",
      "No feature data derived for cell at: LT0048_14, 335, 29, 476, 547\n",
      "No feature data derived for cell at: LT0048_14, 335, 56, 545, 837\n",
      "No feature data derived for cell at: LT0048_14, 335, 56, 466, 558\n",
      "No feature data derived for cell at: LT0048_14, 335, 56, 193, 423\n",
      "No feature data derived for cell at: LT0048_14, 335, 56, 483, 557\n",
      "No feature data derived for cell at: LT0064_14, 3, 54, 268, 514\n",
      "No feature data derived for cell at: LT0066_19, 287, 22, 1206, 673\n",
      "No feature data derived for cell at: LT0066_19, 287, 48, 1104, 456\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 1101, 460\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 817, 552\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 404, 517\n",
      "No feature data derived for cell at: LT0089_01, 175, 93, 223, 611\n",
      "No feature data derived for cell at: LT0089_01, 175, 93, 505, 363\n",
      "No feature data derived for cell at: LT0090_33, 383, 84, 399, 298\n",
      "No feature data derived for cell at: LT0094_01, 319, 85, 507, 685\n",
      "No feature data derived for cell at: LT0094_01, 319, 85, 282, 416\n",
      "No feature data derived for cell at: LT0094_01, 319, 85, 215, 445\n",
      "No feature data derived for cell at: LT0109_38, 381, 87, 874, 321\n",
      "No feature data derived for cell at: LT0109_38, 381, 87, 762, 636\n",
      "No feature data derived for cell at: LT0109_38, 338, 80, 965, 563\n",
      "No feature data derived for cell at: LT0138_03, 127, 51, 536, 844\n",
      "No feature data derived for cell at: LT0138_03, 127, 51, 639, 666\n",
      "No feature data derived for cell at: LT0138_03, 127, 51, 136, 626\n",
      "No feature data derived for cell at: LT0023_04, 5, 30, 1119, 887\n",
      "No feature data derived for cell at: LT0090_33, 383, 84, 669, 392\n",
      "No feature data derived for cell at: LT0090_33, 383, 92, 625, 387\n",
      "No feature data derived for cell at: LT0100_03, 93, 37, 1047, 249\n",
      "No feature data derived for cell at: LT0094_04, 319, 5, 749, 835\n",
      "No feature data derived for cell at: LT0094_04, 319, 7, 749, 834\n",
      "No feature data derived for cell at: LT0138_03, 127, 30, 815, 694\n",
      "No feature data derived for cell at: LT0138_03, 127, 35, 706, 818\n",
      "No feature data derived for cell at: LT0030_17, 184, 39, 1101, 533\n",
      "No feature data derived for cell at: LT0003_40, 149, 83, 407, 878\n",
      "No feature data derived for cell at: LT0012_25, 349, 83, 106, 565\n",
      "No feature data derived for cell at: LT0012_25, 349, 83, 1085, 631\n",
      "No feature data derived for cell at: LT0012_29, 252, 83, 631, 846\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 1158, 821\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 1136, 849\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 387, 171\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 79, 176\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 294, 485\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 341, 501\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 1258, 381\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 818, 594\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 735, 93\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 1261, 364\n",
      "No feature data derived for cell at: LT0013_42, 107, 76, 1053, 573\n",
      "No feature data derived for cell at: LT0013_42, 107, 76, 1312, 216\n",
      "No feature data derived for cell at: LT0013_42, 107, 76, 278, 715\n",
      "No feature data derived for cell at: LT0013_42, 107, 76, 607, 242\n",
      "No feature data derived for cell at: LT0014_12, 159, 70, 1265, 866\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 734, 253\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 767, 833\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 744, 259\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 797, 133\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 783, 940\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 868, 195\n",
      "No feature data derived for cell at: LT0019_06, 140, 70, 361, 879\n",
      "No feature data derived for cell at: LT0023_04, 5, 64, 696, 482\n",
      "No feature data derived for cell at: LT0023_04, 5, 72, 563, 675\n",
      "No feature data derived for cell at: LT0023_04, 5, 87, 892, 597\n",
      "No feature data derived for cell at: LT0026_22, 258, 67, 1050, 779\n",
      "No feature data derived for cell at: LT0026_22, 258, 85, 870, 710\n",
      "No feature data derived for cell at: LT0027_44, 292, 88, 406, 102\n",
      "No feature data derived for cell at: LT0027_44, 30, 58, 799, 349\n",
      "No feature data derived for cell at: LT0027_44, 30, 58, 838, 162\n",
      "No feature data derived for cell at: LT0027_44, 30, 58, 205, 586\n",
      "No feature data derived for cell at: LT0027_44, 30, 74, 213, 627\n",
      "No feature data derived for cell at: LT0027_44, 30, 74, 802, 388\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 958, 286\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 82, 954\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 733, 690\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 200, 654\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 686, 601\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 232, 234\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 869, 391\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 897, 400\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 202, 657\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 735, 692\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 254, 431\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 755, 178\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 696, 601\n",
      "No feature data derived for cell at: LT0028_14, 129, 55, 676, 259\n",
      "No feature data derived for cell at: LT0028_14, 129, 66, 670, 251\n",
      "No feature data derived for cell at: LT0028_14, 129, 66, 712, 139\n",
      "No feature data derived for cell at: LT0042_10, 144, 88, 224, 890\n",
      "No feature data derived for cell at: LT0043_48, 166, 47, 276, 266\n",
      "No feature data derived for cell at: LT0043_48, 166, 55, 656, 255\n",
      "No feature data derived for cell at: LT0043_48, 166, 56, 288, 310\n",
      "No feature data derived for cell at: LT0043_48, 166, 79, 475, 338\n",
      "No feature data derived for cell at: LT0043_48, 166, 79, 71, 678\n",
      "No feature data derived for cell at: LT0043_48, 166, 84, 472, 604\n",
      "No feature data derived for cell at: LT0043_48, 166, 84, 793, 745\n",
      "No feature data derived for cell at: LT0044_36, 249, 46, 146, 247\n",
      "No feature data derived for cell at: LT0046_19, 356, 92, 485, 196\n",
      "No feature data derived for cell at: LT0047_27, 140, 84, 132, 794\n",
      "No feature data derived for cell at: LT0065_04, 20, 57, 787, 473\n",
      "No feature data derived for cell at: LT0065_04, 20, 72, 860, 190\n",
      "No feature data derived for cell at: LT0065_04, 20, 92, 1017, 824\n",
      "No feature data derived for cell at: LT0065_04, 20, 92, 765, 494\n",
      "No feature data derived for cell at: LT0065_06, 54, 93, 1002, 157\n",
      "No feature data derived for cell at: LT0067_02, 99, 77, 1147, 405\n",
      "No feature data derived for cell at: LT0067_02, 99, 77, 604, 686\n",
      "No feature data derived for cell at: LT0067_02, 99, 92, 602, 690\n",
      "No feature data derived for cell at: LT0084_46, 3, 46, 982, 454\n",
      "No feature data derived for cell at: LT0084_46, 3, 56, 783, 770\n",
      "No feature data derived for cell at: LT0084_46, 3, 56, 1015, 858\n",
      "No feature data derived for cell at: LT0084_46, 3, 56, 99, 390\n",
      "No feature data derived for cell at: LT0084_46, 3, 80, 151, 247\n",
      "No feature data derived for cell at: LT0084_46, 3, 80, 183, 320\n",
      "No feature data derived for cell at: LT0084_46, 3, 91, 379, 137\n",
      "No feature data derived for cell at: LT0084_46, 3, 91, 1006, 354\n",
      "No feature data derived for cell at: LT0084_46, 3, 91, 160, 144\n",
      "No feature data derived for cell at: LT0084_46, 3, 91, 789, 639\n",
      "No feature data derived for cell at: LT0089_01, 175, 39, 1133, 894\n",
      "No feature data derived for cell at: LT0089_01, 175, 44, 339, 34\n",
      "No feature data derived for cell at: LT0089_01, 175, 60, 772, 880\n",
      "No feature data derived for cell at: LT0089_01, 175, 71, 763, 875\n",
      "No feature data derived for cell at: LT0089_01, 175, 71, 393, 574\n",
      "No feature data derived for cell at: LT0089_01, 175, 93, 164, 438\n",
      "No feature data derived for cell at: LT0089_01, 175, 93, 1027, 766\n",
      "No feature data derived for cell at: LT0093_13, 147, 69, 290, 228\n",
      "No feature data derived for cell at: LT0093_17, 114, 88, 747, 391\n",
      "No feature data derived for cell at: LT0093_17, 114, 88, 137, 718\n",
      "No feature data derived for cell at: LT0094_04, 319, 66, 1088, 939\n",
      "No feature data derived for cell at: LT0098_13, 21, 21, 224, 50\n",
      "No feature data derived for cell at: LT0098_13, 21, 27, 627, 377\n",
      "No feature data derived for cell at: LT0098_13, 21, 77, 379, 655\n",
      "No feature data derived for cell at: LT0100_03, 93, 37, 581, 212\n",
      "No feature data derived for cell at: LT0100_03, 93, 37, 1311, 693\n",
      "No feature data derived for cell at: LT0100_03, 93, 56, 118, 521\n",
      "No feature data derived for cell at: LT0100_03, 93, 84, 1034, 629\n",
      "No feature data derived for cell at: LT0132_31, 53, 75, 498, 160\n",
      "No feature data derived for cell at: LT0132_31, 53, 75, 183, 217\n",
      "No feature data derived for cell at: LT0157_04, 5, 61, 515, 291\n",
      "No feature data derived for cell at: LT0157_04, 5, 78, 938, 351\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 363, 951\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 318, 907\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 1115, 361\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 987, 204\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 586, 882\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 326, 104\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 582, 299\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 262, 879\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 1156, 191\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 1239, 258\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 390, 417\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 208, 400\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 1296, 879\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 144, 367\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 1180, 341\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 188, 407\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 922, 158\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 260, 380\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 697, 980\n",
      "No feature data derived for cell at: LT0013_42, 107, 23, 407, 590\n",
      "No feature data derived for cell at: LT0013_42, 107, 28, 177, 764\n",
      "No feature data derived for cell at: LT0013_42, 107, 28, 111, 995\n",
      "No feature data derived for cell at: LT0013_42, 107, 52, 73, 295\n",
      "No feature data derived for cell at: LT0013_42, 107, 52, 410, 588\n",
      "No feature data derived for cell at: LT0013_42, 107, 52, 283, 77\n",
      "No feature data derived for cell at: LT0013_42, 107, 76, 1271, 473\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 1048, 464\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 197, 470\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 129, 355\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 712, 139\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 593, 53\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 494, 732\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 666, 356\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 588, 44\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 122, 490\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 718, 123\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 188, 748\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 586, 44\n",
      "No feature data derived for cell at: LT0023_04, 5, 30, 664, 319\n",
      "No feature data derived for cell at: LT0023_04, 5, 30, 713, 483\n",
      "No feature data derived for cell at: LT0023_04, 5, 30, 73, 235\n",
      "No feature data derived for cell at: LT0023_04, 5, 87, 844, 949\n",
      "No feature data derived for cell at: LT0023_04, 5, 87, 525, 981\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 486, 939\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 520, 757\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 621, 295\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 1074, 595\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 891, 391\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 877, 522\n",
      "No feature data derived for cell at: LT0026_22, 258, 67, 1105, 728\n",
      "No feature data derived for cell at: LT0026_22, 258, 67, 620, 300\n",
      "No feature data derived for cell at: LT0026_22, 258, 85, 942, 669\n",
      "No feature data derived for cell at: LT0026_22, 258, 85, 665, 476\n",
      "No feature data derived for cell at: LT0026_22, 258, 95, 658, 470\n",
      "No feature data derived for cell at: LT0026_22, 258, 95, 939, 674\n",
      "No feature data derived for cell at: LT0026_22, 258, 95, 751, 491\n",
      "No feature data derived for cell at: LT0026_22, 258, 95, 995, 695\n",
      "No feature data derived for cell at: LT0026_22, 258, 95, 494, 914\n",
      "No feature data derived for cell at: LT0027_44, 30, 58, 253, 234\n",
      "No feature data derived for cell at: LT0027_44, 30, 58, 1205, 809\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 248, 191\n",
      "No feature data derived for cell at: LT0028_14, 129, 17, 1134, 426\n",
      "No feature data derived for cell at: LT0028_14, 129, 55, 705, 97\n",
      "No feature data derived for cell at: LT0028_14, 129, 66, 1103, 458\n",
      "No feature data derived for cell at: LT0028_14, 129, 66, 566, 388\n",
      "No feature data derived for cell at: LT0028_14, 129, 66, 1321, 323\n",
      "No feature data derived for cell at: LT0028_14, 129, 66, 1210, 189\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 1170, 825\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 914, 666\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 585, 271\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 789, 144\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 594, 333\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 1059, 96\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 1132, 777\n",
      "No feature data derived for cell at: LT0038_27, 250, 8, 291, 799\n",
      "No feature data derived for cell at: LT0043_48, 166, 36, 61, 667\n",
      "No feature data derived for cell at: LT0043_48, 166, 36, 498, 593\n",
      "No feature data derived for cell at: LT0043_48, 166, 36, 822, 721\n",
      "No feature data derived for cell at: LT0043_48, 166, 44, 68, 188\n",
      "No feature data derived for cell at: LT0043_48, 166, 55, 997, 510\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 351, 64\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 676, 451\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 628, 513\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 63, 397\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 625, 109\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 533, 82\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 627, 435\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 772, 433\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 1089, 427\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 674, 449\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 622, 511\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 807, 190\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 298, 497\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 353, 66\n",
      "No feature data derived for cell at: LT0047_27, 140, 68, 115, 855\n",
      "No feature data derived for cell at: LT0047_27, 140, 75, 558, 400\n",
      "No feature data derived for cell at: LT0048_13, 69, 15, 337, 738\n",
      "No feature data derived for cell at: LT0065_04, 20, 49, 226, 289\n",
      "No feature data derived for cell at: LT0065_04, 20, 49, 579, 875\n",
      "No feature data derived for cell at: LT0065_04, 20, 57, 581, 873\n",
      "No feature data derived for cell at: LT0065_04, 20, 57, 1006, 788\n",
      "No feature data derived for cell at: LT0065_04, 20, 72, 300, 559\n",
      "No feature data derived for cell at: LT0065_04, 20, 72, 544, 875\n",
      "No feature data derived for cell at: LT0067_02, 99, 19, 549, 770\n",
      "No feature data derived for cell at: LT0067_02, 99, 19, 592, 415\n",
      "No feature data derived for cell at: LT0067_02, 99, 19, 292, 978\n",
      "No feature data derived for cell at: LT0067_02, 99, 19, 1148, 815\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 132, 568\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 64, 818\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 264, 947\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 24, 809\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 1130, 388\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 1148, 869\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 722, 996\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 549, 746\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 207, 147\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 1159, 553\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 37, 635\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 1265, 185\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 1148, 818\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 739, 211\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 741, 802\n",
      "No feature data derived for cell at: LT0084_46, 3, 46, 1072, 823\n",
      "No feature data derived for cell at: LT0084_46, 3, 46, 694, 727\n",
      "No feature data derived for cell at: LT0084_46, 3, 46, 1004, 830\n",
      "No feature data derived for cell at: LT0084_46, 3, 46, 110, 121\n",
      "No feature data derived for cell at: LT0089_01, 175, 44, 1227, 348\n",
      "No feature data derived for cell at: LT0093_13, 147, 77, 741, 917\n",
      "No feature data derived for cell at: LT0093_13, 147, 77, 929, 123\n",
      "No feature data derived for cell at: LT0093_13, 147, 77, 842, 980\n",
      "No feature data derived for cell at: LT0100_03, 93, 37, 198, 140\n",
      "No feature data derived for cell at: LT0100_03, 93, 56, 1078, 704\n",
      "No feature data derived for cell at: LT0100_03, 93, 56, 133, 315\n",
      "No feature data derived for cell at: LT0100_03, 93, 84, 144, 711\n",
      "No feature data derived for cell at: LT0109_38, 381, 66, 774, 765\n",
      "No feature data derived for cell at: LT0109_38, 349, 88, 1292, 961\n",
      "No feature data derived for cell at: LT0157_04, 5, 61, 858, 953\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 846, 491\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 900, 448\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 245, 858\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 464, 938\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 100, 778\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 834, 390\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 344, 170\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 514, 256\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 379, 800\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 903, 89\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 87, 882\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 626, 408\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 442, 426\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 68, 496\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 568, 130\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 478, 891\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 437, 602\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 827, 284\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 385, 179\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 476, 783\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 670, 688\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 691, 770\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 146, 931\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 631, 734\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 96, 538\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 731, 637\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 168, 747\n",
      "No feature data derived for cell at: LT0043_48, 166, 36, 1207, 8\n",
      "No feature data derived for cell at: LT0026_22, 199, 13, 1154, 305\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 1228, 1006\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 894, 465\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 1147, 864\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 937, 757\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 850, 29\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 1016, 363\n",
      "No feature data derived for cell at: LT0027_45, 84, 13, 553, 905\n",
      "No feature data derived for cell at: LT0027_45, 84, 13, 528, 849\n",
      "No feature data derived for cell at: LT0027_45, 84, 13, 664, 216\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 553, 540\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 1028, 355\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 1071, 239\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 284, 232\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 284, 402\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 1109, 469\n",
      "No feature data derived for cell at: LT0078_05, 4, 33, 406, 988\n",
      "No feature data derived for cell at: LT0153_01, 13, 81, 1059, 539\n",
      "No feature data derived for cell at: LT0153_01, 13, 81, 363, 454\n",
      "No feature data derived for cell at: LT0153_01, 13, 81, 603, 656\n",
      "No feature data derived for cell at: LT0153_01, 13, 81, 627, 429\n",
      "No feature data derived for cell at: LT0601_01, 217, 49, 466, 216\n",
      "Shape of labeled_cells: (2916, 1450)\n",
      "Compiling data for dataset type no_ic\n",
      "Loading data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_23.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_2.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_26.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_6.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_9.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_27.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_0.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_14.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_5.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_24.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_19.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_10.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_21.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_22.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_17.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_16.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_7.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_13.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_15.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_1.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_3.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_8.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_4.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_18.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_12.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_25.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_20.csv.gz...\n",
      "Loading batch data from ../1.idr_streams/extracted_features/training_data__no_ic/merged_features/batch_11.csv.gz...\n",
      "Training data has (67769, 1449)\n",
      "No feature data derived for cell at: LT0043_48, 166, 44, 1011, 156\n",
      "No feature data derived for cell at: LT0043_48, 166, 52, 1068, 97\n",
      "No feature data derived for cell at: LT0048_13, 69, 72, 258, 60\n",
      "No feature data derived for cell at: LT0014_12, 159, 70, 911, 678\n",
      "No feature data derived for cell at: LT0043_48, 166, 44, 296, 320\n",
      "No feature data derived for cell at: LT0043_48, 166, 71, 279, 313\n",
      "No feature data derived for cell at: LT0066_19, 287, 48, 1137, 693\n",
      "No feature data derived for cell at: LT0066_19, 287, 48, 773, 103\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 1029, 548\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 958, 105\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 1132, 429\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 719, 347\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 826, 373\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 1229, 384\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 587, 445\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 719, 345\n",
      "No feature data derived for cell at: LT0066_19, 287, 93, 668, 25\n",
      "No feature data derived for cell at: LT0066_19, 287, 93, 517, 292\n",
      "No feature data derived for cell at: LT0084_46, 3, 56, 1242, 633\n",
      "No feature data derived for cell at: LT0084_46, 3, 56, 136, 170\n",
      "No feature data derived for cell at: LT0091_30, 169, 43, 1243, 869\n",
      "No feature data derived for cell at: LT0091_30, 169, 43, 787, 603\n",
      "No feature data derived for cell at: LT0157_04, 5, 47, 1278, 951\n",
      "No feature data derived for cell at: LT0157_04, 5, 61, 373, 912\n",
      "No feature data derived for cell at: LT0043_48, 166, 55, 579, 335\n",
      "No feature data derived for cell at: LT0003_40, 149, 83, 943, 381\n",
      "No feature data derived for cell at: LT0013_42, 107, 28, 208, 555\n",
      "No feature data derived for cell at: LT0013_42, 107, 39, 402, 797\n",
      "No feature data derived for cell at: LT0015_22, 69, 89, 1248, 921\n",
      "No feature data derived for cell at: LT0015_22, 69, 89, 686, 367\n",
      "No feature data derived for cell at: LT0019_06, 140, 70, 423, 374\n",
      "No feature data derived for cell at: LT0019_06, 140, 83, 965, 580\n",
      "No feature data derived for cell at: LT0039_45, 281, 26, 988, 298\n",
      "No feature data derived for cell at: LT0039_45, 281, 27, 989, 308\n",
      "No feature data derived for cell at: LT0039_45, 281, 29, 710, 812\n",
      "No feature data derived for cell at: LT0039_45, 281, 32, 611, 940\n",
      "No feature data derived for cell at: LT0039_45, 281, 32, 439, 386\n",
      "No feature data derived for cell at: LT0041_32, 132, 74, 904, 154\n",
      "No feature data derived for cell at: LT0048_14, 335, 29, 726, 693\n",
      "No feature data derived for cell at: LT0048_14, 335, 29, 941, 166\n",
      "No feature data derived for cell at: LT0048_14, 335, 56, 466, 558\n",
      "No feature data derived for cell at: LT0064_14, 3, 54, 268, 514\n",
      "No feature data derived for cell at: LT0066_19, 287, 22, 1206, 673\n",
      "No feature data derived for cell at: LT0066_19, 287, 75, 1101, 460\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 817, 552\n",
      "No feature data derived for cell at: LT0066_19, 287, 87, 404, 517\n",
      "No feature data derived for cell at: LT0089_01, 175, 93, 415, 592\n",
      "No feature data derived for cell at: LT0090_33, 383, 84, 399, 298\n",
      "No feature data derived for cell at: LT0091_30, 169, 21, 381, 675\n",
      "No feature data derived for cell at: LT0094_01, 319, 85, 507, 685\n",
      "No feature data derived for cell at: LT0094_01, 319, 85, 282, 416\n",
      "No feature data derived for cell at: LT0094_01, 319, 85, 215, 445\n",
      "No feature data derived for cell at: LT0109_38, 381, 87, 874, 321\n",
      "No feature data derived for cell at: LT0109_38, 381, 87, 762, 636\n",
      "No feature data derived for cell at: LT0109_38, 338, 80, 893, 393\n",
      "No feature data derived for cell at: LT0109_38, 338, 80, 965, 563\n",
      "No feature data derived for cell at: LT0138_03, 127, 51, 536, 844\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 746, 848\n",
      "No feature data derived for cell at: LT0023_04, 5, 30, 1119, 887\n",
      "No feature data derived for cell at: LT0030_17, 184, 87, 494, 258\n",
      "No feature data derived for cell at: LT0030_17, 184, 87, 87, 722\n",
      "No feature data derived for cell at: LT0043_48, 166, 57, 790, 737\n",
      "No feature data derived for cell at: LT0090_33, 383, 84, 489, 345\n",
      "No feature data derived for cell at: LT0090_33, 383, 84, 567, 319\n",
      "No feature data derived for cell at: LT0090_33, 383, 84, 669, 392\n",
      "No feature data derived for cell at: LT0090_33, 383, 92, 625, 387\n",
      "No feature data derived for cell at: LT0100_03, 93, 37, 1047, 249\n",
      "No feature data derived for cell at: LT0030_17, 58, 52, 588, 746\n",
      "No feature data derived for cell at: LT0094_04, 319, 5, 749, 835\n",
      "No feature data derived for cell at: LT0094_04, 319, 7, 749, 834\n",
      "No feature data derived for cell at: LT0138_03, 127, 30, 815, 694\n",
      "No feature data derived for cell at: LT0138_03, 127, 35, 706, 818\n",
      "No feature data derived for cell at: LT0030_17, 184, 39, 1101, 533\n",
      "No feature data derived for cell at: LT0003_40, 149, 83, 407, 878\n",
      "No feature data derived for cell at: LT0012_25, 349, 83, 1085, 631\n",
      "No feature data derived for cell at: LT0012_29, 252, 83, 631, 846\n",
      "No feature data derived for cell at: LT0012_29, 252, 83, 1006, 921\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 1158, 821\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 1136, 849\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 387, 171\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 79, 176\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 341, 501\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 1258, 381\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 818, 594\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 1261, 364\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 1308, 407\n",
      "No feature data derived for cell at: LT0013_42, 107, 76, 1053, 573\n",
      "No feature data derived for cell at: LT0013_42, 107, 76, 1312, 216\n",
      "No feature data derived for cell at: LT0013_42, 107, 76, 278, 715\n",
      "No feature data derived for cell at: LT0013_42, 107, 76, 607, 242\n",
      "No feature data derived for cell at: LT0014_12, 159, 70, 1265, 866\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 734, 253\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 767, 833\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 744, 259\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 797, 133\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 783, 940\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 868, 195\n",
      "No feature data derived for cell at: LT0019_06, 140, 70, 361, 879\n",
      "No feature data derived for cell at: LT0023_04, 5, 64, 696, 482\n",
      "No feature data derived for cell at: LT0023_04, 5, 87, 892, 597\n",
      "No feature data derived for cell at: LT0026_22, 258, 67, 1050, 779\n",
      "No feature data derived for cell at: LT0026_22, 258, 85, 870, 710\n",
      "No feature data derived for cell at: LT0027_44, 292, 88, 406, 102\n",
      "No feature data derived for cell at: LT0027_44, 30, 58, 205, 586\n",
      "No feature data derived for cell at: LT0027_44, 30, 74, 213, 627\n",
      "No feature data derived for cell at: LT0027_44, 30, 74, 802, 388\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 958, 286\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 82, 954\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 733, 690\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 200, 654\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 686, 601\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 232, 234\n",
      "No feature data derived for cell at: LT0027_44, 30, 86, 905, 338\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 897, 400\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 202, 657\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 735, 692\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 254, 431\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 755, 178\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 696, 601\n",
      "No feature data derived for cell at: LT0039_45, 281, 26, 1126, 558\n",
      "No feature data derived for cell at: LT0042_10, 144, 36, 230, 448\n",
      "No feature data derived for cell at: LT0042_10, 144, 88, 224, 890\n",
      "No feature data derived for cell at: LT0043_48, 166, 47, 276, 266\n",
      "No feature data derived for cell at: LT0043_48, 166, 55, 656, 255\n",
      "No feature data derived for cell at: LT0043_48, 166, 55, 438, 375\n",
      "No feature data derived for cell at: LT0043_48, 166, 56, 288, 310\n",
      "No feature data derived for cell at: LT0043_48, 166, 56, 338, 921\n",
      "No feature data derived for cell at: LT0043_48, 166, 74, 473, 337\n",
      "No feature data derived for cell at: LT0043_48, 166, 79, 475, 338\n",
      "No feature data derived for cell at: LT0043_48, 166, 79, 469, 602\n",
      "No feature data derived for cell at: LT0043_48, 166, 79, 795, 743\n",
      "No feature data derived for cell at: LT0043_48, 166, 79, 71, 678\n",
      "No feature data derived for cell at: LT0043_48, 166, 84, 472, 604\n",
      "No feature data derived for cell at: LT0043_48, 166, 84, 793, 745\n",
      "No feature data derived for cell at: LT0044_36, 249, 46, 146, 247\n",
      "No feature data derived for cell at: LT0046_19, 356, 92, 485, 196\n",
      "No feature data derived for cell at: LT0047_27, 140, 84, 132, 794\n",
      "No feature data derived for cell at: LT0065_04, 20, 57, 787, 473\n",
      "No feature data derived for cell at: LT0065_04, 20, 92, 1017, 824\n",
      "No feature data derived for cell at: LT0065_04, 20, 92, 765, 494\n",
      "No feature data derived for cell at: LT0065_06, 54, 93, 1002, 157\n",
      "No feature data derived for cell at: LT0067_02, 99, 77, 604, 686\n",
      "No feature data derived for cell at: LT0067_02, 99, 77, 775, 424\n",
      "No feature data derived for cell at: LT0067_02, 99, 92, 602, 690\n",
      "No feature data derived for cell at: LT0067_02, 99, 92, 265, 114\n",
      "No feature data derived for cell at: LT0084_46, 3, 46, 982, 454\n",
      "No feature data derived for cell at: LT0084_46, 3, 56, 783, 770\n",
      "No feature data derived for cell at: LT0084_46, 3, 56, 99, 390\n",
      "No feature data derived for cell at: LT0084_46, 3, 80, 1043, 538\n",
      "No feature data derived for cell at: LT0084_46, 3, 80, 380, 30\n",
      "No feature data derived for cell at: LT0084_46, 3, 80, 151, 247\n",
      "No feature data derived for cell at: LT0084_46, 3, 80, 183, 320\n",
      "No feature data derived for cell at: LT0084_46, 3, 91, 379, 137\n",
      "No feature data derived for cell at: LT0084_46, 3, 91, 918, 349\n",
      "No feature data derived for cell at: LT0084_46, 3, 91, 160, 144\n",
      "No feature data derived for cell at: LT0084_46, 3, 91, 789, 639\n",
      "No feature data derived for cell at: LT0089_01, 175, 39, 1133, 894\n",
      "No feature data derived for cell at: LT0089_01, 175, 39, 1121, 604\n",
      "No feature data derived for cell at: LT0089_01, 175, 44, 339, 34\n",
      "No feature data derived for cell at: LT0089_01, 175, 60, 772, 880\n",
      "No feature data derived for cell at: LT0089_01, 175, 71, 763, 875\n",
      "No feature data derived for cell at: LT0089_01, 175, 71, 393, 574\n",
      "No feature data derived for cell at: LT0089_01, 175, 93, 164, 438\n",
      "No feature data derived for cell at: LT0089_01, 175, 93, 276, 399\n",
      "No feature data derived for cell at: LT0089_01, 175, 93, 1027, 766\n",
      "No feature data derived for cell at: LT0093_13, 147, 69, 290, 228\n",
      "No feature data derived for cell at: LT0093_17, 114, 88, 794, 750\n",
      "No feature data derived for cell at: LT0093_17, 114, 88, 747, 391\n",
      "No feature data derived for cell at: LT0093_17, 114, 88, 603, 696\n",
      "No feature data derived for cell at: LT0093_17, 114, 88, 137, 718\n",
      "No feature data derived for cell at: LT0094_04, 319, 66, 1088, 939\n",
      "No feature data derived for cell at: LT0098_13, 21, 27, 627, 377\n",
      "No feature data derived for cell at: LT0098_13, 21, 77, 379, 655\n",
      "No feature data derived for cell at: LT0100_03, 93, 37, 581, 212\n",
      "No feature data derived for cell at: LT0100_03, 93, 37, 1311, 693\n",
      "No feature data derived for cell at: LT0100_03, 93, 56, 118, 521\n",
      "No feature data derived for cell at: LT0100_03, 93, 84, 1034, 629\n",
      "No feature data derived for cell at: LT0101_01, 277, 66, 976, 460\n",
      "No feature data derived for cell at: LT0132_31, 53, 51, 203, 201\n",
      "No feature data derived for cell at: LT0132_31, 53, 75, 498, 160\n",
      "No feature data derived for cell at: LT0132_31, 53, 75, 183, 217\n",
      "No feature data derived for cell at: LT0157_04, 5, 61, 515, 291\n",
      "No feature data derived for cell at: LT0157_04, 5, 78, 938, 351\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 363, 951\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 318, 907\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 1115, 361\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 987, 204\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 1052, 800\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 586, 882\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 326, 104\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 582, 299\n",
      "No feature data derived for cell at: LT0013_38, 42, 47, 262, 879\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 755, 949\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 382, 877\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 1239, 258\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 390, 417\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 208, 400\n",
      "No feature data derived for cell at: LT0013_38, 42, 75, 1296, 879\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 1180, 341\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 188, 407\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 922, 158\n",
      "No feature data derived for cell at: LT0013_38, 42, 95, 260, 380\n",
      "No feature data derived for cell at: LT0013_42, 107, 23, 407, 590\n",
      "No feature data derived for cell at: LT0013_42, 107, 28, 177, 764\n",
      "No feature data derived for cell at: LT0013_42, 107, 28, 111, 995\n",
      "No feature data derived for cell at: LT0013_42, 107, 52, 73, 295\n",
      "No feature data derived for cell at: LT0013_42, 107, 52, 410, 588\n",
      "No feature data derived for cell at: LT0013_42, 107, 52, 283, 77\n",
      "No feature data derived for cell at: LT0013_42, 107, 76, 1271, 473\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 1048, 464\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 197, 470\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 129, 355\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 712, 139\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 593, 53\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 494, 732\n",
      "No feature data derived for cell at: LT0017_19, 365, 65, 666, 356\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 588, 44\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 122, 490\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 1048, 466\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 718, 123\n",
      "No feature data derived for cell at: LT0017_19, 365, 83, 188, 748\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 586, 44\n",
      "No feature data derived for cell at: LT0017_19, 365, 93, 1047, 467\n",
      "No feature data derived for cell at: LT0023_04, 5, 30, 664, 319\n",
      "No feature data derived for cell at: LT0023_04, 5, 30, 73, 235\n",
      "No feature data derived for cell at: LT0023_04, 5, 87, 844, 949\n",
      "No feature data derived for cell at: LT0023_04, 5, 87, 525, 981\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 486, 939\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 520, 757\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 621, 295\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 1074, 595\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 891, 391\n",
      "No feature data derived for cell at: LT0026_22, 258, 37, 877, 522\n",
      "No feature data derived for cell at: LT0026_22, 258, 67, 1105, 728\n",
      "No feature data derived for cell at: LT0026_22, 258, 67, 493, 917\n",
      "No feature data derived for cell at: LT0026_22, 258, 67, 620, 300\n",
      "No feature data derived for cell at: LT0026_22, 258, 85, 942, 669\n",
      "No feature data derived for cell at: LT0026_22, 258, 85, 665, 476\n",
      "No feature data derived for cell at: LT0026_22, 258, 95, 658, 470\n",
      "No feature data derived for cell at: LT0026_22, 258, 95, 939, 674\n",
      "No feature data derived for cell at: LT0026_22, 258, 95, 751, 491\n",
      "No feature data derived for cell at: LT0026_22, 258, 95, 995, 695\n",
      "No feature data derived for cell at: LT0026_22, 258, 95, 494, 914\n",
      "No feature data derived for cell at: LT0027_44, 30, 58, 253, 234\n",
      "No feature data derived for cell at: LT0027_44, 30, 58, 1205, 809\n",
      "No feature data derived for cell at: LT0027_44, 30, 95, 248, 191\n",
      "No feature data derived for cell at: LT0028_14, 129, 17, 1134, 426\n",
      "No feature data derived for cell at: LT0028_14, 129, 55, 705, 97\n",
      "No feature data derived for cell at: LT0028_14, 129, 66, 1103, 458\n",
      "No feature data derived for cell at: LT0028_14, 129, 66, 566, 388\n",
      "No feature data derived for cell at: LT0028_14, 129, 66, 1321, 323\n",
      "No feature data derived for cell at: LT0028_14, 129, 66, 1210, 189\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 1170, 825\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 914, 666\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 585, 271\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 789, 144\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 594, 333\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 1059, 96\n",
      "No feature data derived for cell at: LT0028_14, 129, 91, 1132, 777\n",
      "No feature data derived for cell at: LT0038_27, 250, 8, 291, 799\n",
      "No feature data derived for cell at: LT0042_10, 144, 50, 579, 635\n",
      "No feature data derived for cell at: LT0043_48, 166, 36, 61, 667\n",
      "No feature data derived for cell at: LT0043_48, 166, 36, 498, 593\n",
      "No feature data derived for cell at: LT0043_48, 166, 36, 822, 721\n",
      "No feature data derived for cell at: LT0043_48, 166, 55, 997, 510\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 351, 64\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 676, 451\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 628, 513\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 625, 109\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 534, 127\n",
      "No feature data derived for cell at: LT0046_19, 356, 57, 533, 82\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 627, 435\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 772, 433\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 1089, 427\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 674, 449\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 622, 511\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 391, 141\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 807, 190\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 298, 497\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 353, 66\n",
      "No feature data derived for cell at: LT0046_19, 356, 67, 647, 600\n",
      "No feature data derived for cell at: LT0047_27, 140, 68, 115, 855\n",
      "No feature data derived for cell at: LT0047_27, 140, 75, 558, 400\n",
      "No feature data derived for cell at: LT0048_13, 69, 15, 337, 738\n",
      "No feature data derived for cell at: LT0065_04, 20, 49, 226, 289\n",
      "No feature data derived for cell at: LT0065_04, 20, 49, 579, 875\n",
      "No feature data derived for cell at: LT0065_04, 20, 57, 581, 873\n",
      "No feature data derived for cell at: LT0065_04, 20, 57, 1006, 788\n",
      "No feature data derived for cell at: LT0065_04, 20, 72, 300, 559\n",
      "No feature data derived for cell at: LT0065_04, 20, 72, 544, 875\n",
      "No feature data derived for cell at: LT0067_02, 99, 19, 549, 770\n",
      "No feature data derived for cell at: LT0067_02, 99, 19, 292, 978\n",
      "No feature data derived for cell at: LT0067_02, 99, 19, 1148, 815\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 132, 568\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 64, 818\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 264, 947\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 24, 809\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 271, 132\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 1130, 388\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 617, 848\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 1148, 869\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 722, 996\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 549, 746\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 207, 147\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 1159, 553\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 573, 34\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 1265, 185\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 1148, 818\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 739, 211\n",
      "No feature data derived for cell at: LT0067_02, 99, 37, 741, 802\n",
      "No feature data derived for cell at: LT0084_46, 3, 46, 1072, 823\n",
      "No feature data derived for cell at: LT0084_46, 3, 46, 694, 727\n",
      "No feature data derived for cell at: LT0084_46, 3, 46, 1004, 830\n",
      "No feature data derived for cell at: LT0084_46, 3, 46, 110, 121\n",
      "No feature data derived for cell at: LT0089_01, 175, 44, 1227, 348\n",
      "No feature data derived for cell at: LT0093_13, 147, 77, 741, 917\n",
      "No feature data derived for cell at: LT0093_13, 147, 77, 929, 123\n",
      "No feature data derived for cell at: LT0093_13, 147, 77, 842, 980\n",
      "No feature data derived for cell at: LT0100_03, 93, 37, 198, 140\n",
      "No feature data derived for cell at: LT0100_03, 93, 56, 1078, 704\n",
      "No feature data derived for cell at: LT0100_03, 93, 56, 133, 315\n",
      "No feature data derived for cell at: LT0100_03, 93, 84, 144, 711\n",
      "No feature data derived for cell at: LT0101_01, 277, 66, 1060, 655\n",
      "No feature data derived for cell at: LT0109_38, 381, 66, 774, 765\n",
      "No feature data derived for cell at: LT0109_38, 349, 69, 230, 109\n",
      "No feature data derived for cell at: LT0109_38, 349, 88, 1292, 961\n",
      "No feature data derived for cell at: LT0157_04, 5, 61, 858, 953\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 846, 491\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 900, 448\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 34, 542\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 245, 858\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 464, 938\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 100, 778\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 834, 390\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 344, 170\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 514, 256\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 379, 800\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 903, 89\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 87, 882\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 626, 408\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 442, 426\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 68, 496\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 568, 130\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 478, 891\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 813, 621\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 437, 602\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 827, 284\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 476, 783\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 670, 688\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 691, 770\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 146, 931\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 633, 97\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 631, 734\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 424, 708\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 96, 538\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 731, 637\n",
      "No feature data derived for cell at: LT0602_04, 59, 49, 168, 747\n",
      "No feature data derived for cell at: LT0043_48, 166, 36, 1207, 8\n",
      "No feature data derived for cell at: LT0026_22, 199, 13, 1154, 305\n",
      "No feature data derived for cell at: LT0027_44, 292, 65, 213, 234\n",
      "No feature data derived for cell at: LT0048_03, 254, 73, 695, 279\n",
      "No feature data derived for cell at: LT0100_03, 93, 37, 653, 173\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 1228, 1006\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 894, 465\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 1147, 864\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 937, 757\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 910, 905\n",
      "No feature data derived for cell at: LT0027_45, 48, 13, 1016, 363\n",
      "No feature data derived for cell at: LT0027_45, 84, 13, 553, 905\n",
      "No feature data derived for cell at: LT0027_45, 84, 13, 528, 849\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 553, 540\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 1028, 355\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 1071, 239\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 284, 232\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 985, 779\n",
      "No feature data derived for cell at: LT0029_05, 60, 33, 1109, 469\n",
      "No feature data derived for cell at: LT0078_05, 4, 33, 406, 988\n",
      "No feature data derived for cell at: LT0153_01, 13, 81, 1059, 539\n",
      "No feature data derived for cell at: LT0153_01, 13, 81, 295, 926\n",
      "No feature data derived for cell at: LT0153_01, 13, 81, 363, 454\n",
      "No feature data derived for cell at: LT0153_01, 13, 81, 603, 656\n",
      "No feature data derived for cell at: LT0153_01, 13, 81, 627, 429\n",
      "No feature data derived for cell at: LT0601_01, 217, 49, 693, 472\n",
      "Shape of labeled_cells: (2894, 1450)\n"
     ]
    }
   ],
   "source": [
    "dataset_types = [\"ic\", \"no_ic\"]\n",
    "\n",
    "for dataset_type in dataset_types:\n",
    "    print(f\"Compiling data for dataset type {dataset_type}\")\n",
    "\n",
    "    # Load training data\n",
    "    training_data_features_path = pathlib.Path(f\"../1.idr_streams/extracted_features/training_data__{dataset_type}/merged_features/\")\n",
    "    training_data = compile_mitocheck_batch_data(training_data_features_path)\n",
    "    print(f\"Training data has {training_data.shape}\")\n",
    "    \n",
    "    # Find cells with MitoCheck data\n",
    "    # Cells may not have feature data found because the specific well is not hosted on IDr (failure to pass QC) or because of differences in Mitocheck/DeepProfiler segmentation\n",
    "    features_samples_path = pathlib.Path(\"../mitocheck_metadata/features.samples.txt\")\n",
    "    training_cells = get_labeled_cells(training_data, features_samples_path, \"DP__Object_Outline\")\n",
    "    print(f\"Shape of labeled_cells: {training_cells.shape}\")\n",
    "    \n",
    "    # Replace `Shape1` and `Shape3` with their respective classes\n",
    "    # See https://github.com/WayScience/mitocheck_data/issues/16 for more details\n",
    "    training_cells = training_cells.replace(\"Shape1\", \"Binuclear\")\n",
    "    training_cells = training_cells.replace(\"Shape3\", \"Polylobed\")\n",
    "    \n",
    "    # Save compiled training data\n",
    "    compiled_training_data_path = pathlib.Path(f\"{results_dir}/training_data__{dataset_type}.csv.gz\")\n",
    "    training_cells.to_csv(compiled_training_data_path, compression=\"gzip\")"
   ]
  }
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