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Croptype#71

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gabrieltseng wants to merge 197 commits intomainWorldCereal/presto-worldcereal:mainfrom croptypeWorldCereal/presto-worldcereal:croptypeCopy head branch name to clipboard

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Commits

Commits on May 31, 2024

• added code for multiclass finetuning Presto for croptype task

  

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• fixed result collection for sklearn models

  

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Commits on Jun 12, 2024

• added hierarchical classifier v.0 to downstream models

  

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Commits on Jun 19, 2024

• added patches for handling valid_date as token; added more updated dekadal transformation

  

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Commits on Jul 2, 2024

• major change: spatial prediction for croptype + looots of minor changes

  

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Commits on Aug 5, 2024

• replaced confusing argument name; improved formatting

  

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• added valid_month parameters to default config

  

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• added placeholder for loading finetuned model

  

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• class name constructed from task_type; cleaned unused pieces

  

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• added a line to mask latlons for hackey generalizability test

  

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• formatting & cleaning

  

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• updated test split files

  

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Commits on Aug 7, 2024

• bug fix

  

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• bug fixes

  

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• bug fixes and default argument updates

  

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• implemented simple balancing for croptype; CAUTION: makes training MUCH slower 🦥

  

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• switched class balancing from finetune_class to a new balanced_class; now naive balancing does not repeat every smallest class and is much faster; thanks for the idea @kvantricht!

  

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• Merge branch 'main' into croptype

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• black fixes

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• isort fixes

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• Black fix

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• Black fix

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Commits on Aug 8, 2024

• changed default from None to empty string, according to mypy suggestion 🤷‍♀️

  

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• added missing imports

  

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• changed conflicting variable name

  

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• fixed expected output types

  

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• removed duplicated function

  

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• edited model loading to use updated loading function

  

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• bug fix and mypy fixes

  

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• mypy typing fixes

  

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• another round of black fixes

  

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• flake fixes and additional cleanup

  

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• minor changes to pass ruff checks

  

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Commits on Aug 12, 2024

• formatting fixes

  

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Commits on Aug 13, 2024

• added balance as an argument

  

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• added other_class to CROPTYPE19

  

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• added valid_time attribute handling for compatibility of Phase I and Phase II datasets

  

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• fixed parsing balance as a bool

  

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• bug fixes

  

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• isort version fixes 🤦‍♀️

  

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• another version black fix 😪

  

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• removed unused import

  

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• removed unnecessary assignment

  

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Commits on Aug 20, 2024

• Merge branch 'main' into croptype

  kvantricht

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Commits on Aug 21, 2024

• Merge branch 'main' into croptype

  kvantricht

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Commits on Aug 22, 2024

• Merge branch 'main' into croptype

  kvantricht

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• fixes to pass test_dataset tests

  

  Butsko Christina

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• fixes for test_eval tests

  

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• fixes to pass test_presto tests

  

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  authored and

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• fixed reversed mapping of VV and VH 🤦‍♀️

  

  Butsko Christina

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• new asserts for new output format

  

  Butsko Christina

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• added croptype eval test

  

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• modified lr to be different for cropland/croptype training

  

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• changed to cleaner json handling

  

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• updated test_df to include more croptype samples for croptype tests

  

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• isort fixes

  

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• changing lr for croptype properly

  

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• added spatial inference test for croptype prediction

  

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• formatting

  

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• resolving black version formatting

  

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• resolving black version formatting v.2 😔

  

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• added hiclass package to requirements

  

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Commits on Aug 23, 2024

• Merge branch 'main' into croptype

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Commits on Sep 2, 2024

• uncommented model saving 🤦‍♀️ + minor changes

  

  Butsko Christina

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• substituted ifs with elifs as per Gabis suggestion

  

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• completely ignore catboost_info folder

  

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• removed catboost info folder

  

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• removed unnecessary commented lines

  

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• moved target_crop method into the WorldCerealLabelledDataset class as per Gabi suggestion

  

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• breaking long lines

  

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• isort fixes

  

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• putting target_crop back into WorldCerealBase class ☹

  

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• formatting fixes

  

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• fixed computing valid_date_ind so that it's more robust; added filling in missing timestamps with nodata value

  

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Commits on Sep 4, 2024

• introduced MIN_SAMPLES_PER_CLASS parameter so that it can be reused in metrics calculation

  

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• added additional balancing parameters; optimal values TBD

  

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• add nans handling in metrics calculation

  

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• disentangled the device confusion in tests. Thanks Gabi!

  

  Butsko Christina

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• moved target_crop into WorldCerealLabelledDataset

  

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• replaced model_mode parameter with a more transparent one; done some cleaning

  

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• formatting fixes

  

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Commits on Sep 10, 2024

• removed process_parquet function to utils

  

  Christina Butsko

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• addeded augment parameter

  

  Christina Butsko

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• added function for timeseries subsetting, so that it is centered around valid_date, with the possibility to augment the latter

  

  Christina Butsko

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• added augment parameter; replaced default link to new parquet file; added looping through individual parquets for performance reasons

  

  Christina Butsko

  committed
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• major rework of process_parquet function; minimal viable functionality

  

  Christina Butsko

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Commits on Sep 11, 2024

• moved MIN_EDGE_BUFFER parameter from utils to dataset.py

  

  Christina Butsko

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• added logger message about enabled augmentation

  

  Christina Butsko

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• removed augment=False parameter from evaluate function, since it is anyway False by default

  

  Christina Butsko

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• rephrased checking if valid_date is too close to the edge without messing with augment parameter

  

  Christina Butsko

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• bugs and typos fixes

  

  Christina Butsko

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• moved NODATA and MIN_EGDE parameters to dataops.py to avoid circular imports and failing tests

  

  Christina Butsko

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• updated test dataset to use new ong parquet format

  

  Christina Butsko

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• updated tests

  

  Christina Butsko

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• created separate test file for process_parquet function

  

  Christina Butsko

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• an attempt to make time_token shift more general than just for months

  

  Christina Butsko

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Commits on Sep 20, 2024

• merging main to croptype

  

  Christina Butsko

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• black fix

  

  Christina Butsko

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• merging changes from main

  

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• black fix

  

  Christina Butsko

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Commits on Sep 23, 2024

• adding test long parquet file

  

  Christina Butsko

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• fixed test file path

  

  Christina Butsko

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• isort fix

  

  Christina Butsko

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  55dbbbe

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• fixed test and commented lines that will not be needed after merge

  

  Christina Butsko

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• Formatting

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• Formatting

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• making GT values binary crop/nocrop

  

  Christina Butsko

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• Test with 1 epoch finetuning

  kvantricht

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• Merge branch 'using-new-parquet-in-train' of github.com:WorldCereal/presto-worldcereal into using-new-parquet-in-train

  kvantricht

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• Bump einops version

  kvantricht

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Commits on Sep 24, 2024

• created different py files for ss training and finetuning

  

  Christina Butsko

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• fixed plotting functionality for new patches format

  

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• removed unnecessary line

  

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Commits on Sep 25, 2024

• fixed masking bug

  

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• fixed usage of time token during finetuning

  

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• added milder handling for lower mask_ratios

  

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• added logger messaging about balancing

  

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Commits on Sep 26, 2024

• fixed bug in plotting

  

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• bug fixes and cleanup

  

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  36f75a4

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• added logging for masking and time token usage

  

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  2c0c325

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• bug fixes and cleanup

  

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  e205514

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• fixed SSL

  

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• added basic test to check balancing

  

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• fixed timestep_positions function for ssl

  

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• added tests for temporal shift

  

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Commits on Sep 27, 2024

• test fixes

  

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• isort fixes

  

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• formatting fixes

  

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• another version of black fixes 🤦‍♀️

  

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Commits on Sep 30, 2024

• Bump version

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Commits on Oct 1, 2024

• dont import matplotlib globally

  kvantricht

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• #108 avoid global import of CLASS_MAPPINGS

  kvantricht

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• Remove unused import

  kvantricht

  committed
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• Run tests with less CatBoost iterations

  kvantricht

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• Formatting fix

  kvantricht

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• added handling of corner case when during SSL we only have 12 timesteps available

  

  Butsko Christina

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• added a slightly better explanation of valid_position variable

  

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• fixed ndvi masking

  

  Butsko Christina

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• formatting fixes

  

  Butsko Christina

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Commits on Oct 4, 2024

• Allow running inference without valid_date token

  kvantricht

  committed
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• bug fix

  

  Butsko Christina

  committed
  188f093

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• added proper NDVI masking to InferenceDataset + test

  

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• formatting fixes

  

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• formatting fixes

  

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• added corrected patch that starts with first day of month

  

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• regenerated test features file

  

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Commits on Oct 5, 2024

• #109 pass augment argument

  kvantricht

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• Add location_id and ref_id to processed parquet

  kvantricht

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Commits on Oct 6, 2024

• Add ref_id to test parquet

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Commits on Oct 7, 2024

• avoid if-else

  kvantricht

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• Avoid if else

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• Avoid if-else

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• Formatting

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• Run actions on PR to croptype

  kvantricht

  committed
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• reintroduced ref_id into dataset and made cleaner logger message about samples with incoherent dates

  

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  committed
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• fixing the number of available_timesteps

  

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• fixed available_timesteps computation for corner cases

  

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  committed
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• cleanup

  

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• formatting

  

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Commits on Oct 8, 2024

• additional check on the available_timesteps + descr

  

  Butsko Christina

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• isort fix, hopefully the correct version

  

  Butsko Christina

  committed
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• Check nr of timesteps in inference

  kvantricht

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• Merge branch 'timestep-position-debugging' of github.com:WorldCereal/presto-worldcereal into timestep-position-debugging

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• Attempt to auto-format

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Commits on Oct 9, 2024

• Should be f-string

  kvantricht

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• Moved import to top

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• Merge pull request #114 from WorldCereal/timestep-position-debugging

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• removed unnecessary lines that double the size of embeddings

  

  Butsko Christina

  committed
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• added loading of finetuned model

  

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  committed
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• slightly cleaner handling of valid_month token

  

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• changed strict to True during model loading

  

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Commits on Oct 10, 2024

• enhanced plotting

  

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  committed
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• updated masking not to take into account existing mask

  

  Butsko Christina

  committed
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• turning on augmentation for downstream model

  

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Commits on Oct 11, 2024

• Bugfix: use valid_month_as_token kwarg

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• Formatting fixes

  kvantricht

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• Formatting fix bis

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• added tests for both for using valid_month token and not

  

  Butsko Christina

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• reverting masking changes for now; need to make sure it does not affect SSL

  

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• changed default value of valid_month_as_token to False when loading model\

  

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• added valid_month related tests

  

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• commented lines that create ref feature files

  

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• added new reference feature files for with and without valid_month

  

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• removed unnecessary prints

  

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• formatting

  

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• fixed test for valid_month token

  

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• create ref feature files

  

  Butsko Christina

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• fixed tests

  

  Butsko Christina

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• a very brave attempt to mess with encoder compile 🙈

  

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Commits on Oct 12, 2024

• removing redundant creation of valid_month token when the flag is False

  

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• removed obsolete TODOs

  

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• Merge pull request #115 from WorldCereal/valid_month-and-mask-debugging

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• Bump version number to 0.1.6

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Commits on Nov 18, 2024

• modified tests to bring everything to proper device

  

  Butsko Christina

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Commits on Nov 19, 2024

• more explicit handling of device

  

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• formatting

  

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Commits on Nov 22, 2024

• Merge pull request #119 from WorldCereal/217-device-ambiguity

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