Generates a fully annotated dataset from selected region annotation, segmentation mask annotation, and class dot annotations.
Directory Structure
|-Fully_Annotated_Dataset_Creation/
| |-feature_extraction_from_manual_annotation.py
| |-misc/
| |-metrics/
|-TCGA_Data/
| |-manifest.csv
| |-*.json
|-Segmentation_masks/
Before running modify the first few variables in feature_extraction_from_manual_annotation.py to point them at the manifest, json files, segmentation masks, and raw wsi data.