Update kestrel run scripts

example_case_folders/01_amr_wind_only/sbatch_script.sh

@@ -7,15 +7,15 @@
 # #SBATCH --qos=high  # Uncomment for higher prioirty
 
 # A lot of modules and conda stuff
-source /nopt/nrel/apps/anaconda/5.3/etc/profile.d/conda.sh
-module use /not/nrel/apps/modules/default/modulefiles
+# source /nopt/nrel/apps/anaconda/5.3/etc/profile.d/conda.sh
+# module use /not/nrel/apps/modules/default/modulefiles
 module purge
 module load conda
-export PREFIX=~/.conda-envs/hercules
-export PATH=$PREFIX/bin:$PATH
-export FI_PROVIDER_PATH=$PREFIX/lib/libfabric/prov
-export LD_LIBRARY_PATH=$PREFIX/lib/libfabric:$PREFIX/lib/release_mt:$LD_LIBRARY_PATH
-source activate hercules
+# export PREFIX=~/.conda-envs/hercules
+# export PATH=$PREFIX/bin:$PATH
+# export FI_PROVIDER_PATH=$PREFIX/lib/libfabric/prov
+# export LD_LIBRARY_PATH=$PREFIX/lib/libfabric:$PREFIX/lib/release_mt:$LD_LIBRARY_PATH
+conda activate hercules
 module load helics/3.4.0-gcc10.1.0-open-mpi  
 module load netcdf-c/4.9.2-openmpi-gcc
 

example_case_folders/05_floris_standin_and_electrolyzer/kestrel_run_script.sh

@@ -0,0 +1,53 @@
+#!/bin/bash
+#SBATCH --job-name=hercules
+#SBATCH --time=1:00:00
+#SBATCH --nodes=1
+#SBATCH --account=ssc
+# #SBATCH --qos=high  # Uncomment for higher prioirty
+
+# Kill any active helics jobs
+source ../find_and_kill_helics
+
+# Source the Conda initialization script
+module purge
+module load conda
+conda activate hercules
+
+    #  Versions:
+    #     helics/3.1.0-cray-mpich-intel
+    #     helics/3.4.0-cray-mpich-intel
+    #     helics/3.4.0-gcc10.1.0-open-mpi
+
+# Set up helics and netcdf
+module load helics/3.4.0-cray-mpich-intel
+# module load netcdf-c/4.9.2-openmpi-gcc
+
+# Clean up existing outputs
+if [ -d outputs ]; then rm -r outputs; fi
+mkdir -p outputs
+
+# Generate floris standin data
+python ../../hercules/tools/generate_amr_standin_data.py floris_standin_data.csv
+
+# Set the helics port to use: 
+export HELICS_PORT=32000
+
+helics_broker -t zmq  -f 2 --loglevel="debug" --local_port=$HELICS_PORT & 
+python hercules_runscript_CLcontrol.py hercules_input_000.yaml >> outputs/loghercules_cl 2>&1 &
+python floris_runscript.py amr_input.inp floris_standin_data.csv >> outputs/logfloris_cl 2>&1
+
+# Clean up helics output if there
+# Search for a file that begins with the current year
+# And ends with csv
+# If the file exists, move to outputs folder
+current_year=$(date +"%Y")
+for file in ${current_year}*.csv; do
+    if [ -f "$file" ]; then
+        mv "$file" outputs/
+    fi
+done
+
+# If everything is successful
+echo "Finished running hercules"
+exit 0
+