Joss software release #46
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| name: merge-tests | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| check_changes: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| run_job: ${{ steps.check_files.outputs.run_job }} | |
| steps: | |
| - name: Checkout PyBADS | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| path: pybads | |
| - name: Check for modified files | |
| id: check_files | |
| run: | | |
| cd ./pybads | |
| echo "=============== list modified files ===============" | |
| git diff --name-only origin/main | |
| echo "========== check paths of modified files ==========" | |
| git diff --name-only origin/main > files.txt | |
| echo "run_job=false" >> $GITHUB_OUTPUT | |
| changes=false | |
| while IFS= read -r file | |
| do | |
| echo $file | |
| if [[ ($file != pybads/*) && ($file != pyproject.toml) && ($file != setup.py) ]]; then | |
| : | |
| else | |
| echo "Change in source files found, running tests." | |
| echo "run_job=true" >> $GITHUB_OUTPUT | |
| changes=true | |
| break | |
| fi | |
| done < files.txt | |
| if [ "$changes" = false ]; then | |
| echo "No changes to source directory found, skipping tests." | |
| fi | |
| tests: | |
| needs: check_changes | |
| if: needs.check_changes.outputs.run_job == 'true' | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout PyBADS | |
| uses: actions/checkout@v3 | |
| with: | |
| path: pybads | |
| - name: Checkout GPyReg | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: acerbilab/gpyreg | |
| path: gpyreg | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install PyBADS | |
| run: | | |
| cd ./pybads | |
| python -m pip install -e . | |
| - name: Install GPyReg | |
| run: | | |
| cd ./gpyreg | |
| python -m pip install -e . | |
| - name: Run tests | |
| run: | | |
| cd ./pybads | |
| python -m pytest --reruns=5 -x -vv |