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achow/Bzet-Genome-Compress
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Bzet.h can be found at https://github.com/achow/Bzet Code used to generate JWB-unified-file.txt, the input file, can be found at http://www.ics.uci.edu/~dnazip/index.html The code for the WAH* implementation used can be found at https://github.com/stefanwoj89/BZET-RLE-API The code for FastBit WAH was provided by Kesheng Wu. Defines when using Bzet.h: BZET_IMPL_ Including Bzet.h also includes the Bzet implementation NODE_ELS Flavor of Bzet to use, default 8, must be a power of 2 greater than 4 STEP_BYTES Size of auxiliary array elements, recommended default is 2 Input to all programs is JWB-unified-file.txt from stdin. gencomp2.cpp The genome compression implementation utilizing Bzet gwahtest.cpp Tests sizes, speed of compressing difference positions using WAH*. bvtest.cpp Tests sizes, speed of compressing difference positions using FastBit WAH. bzettest.cpp Tests sizes, speed of compressing difference positions using Bzet
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