Merge branch 'main' into feat-propagator-statistics

.github/workflows/checks.yml

@@ -145,7 +145,7 @@ jobs:
           python-version: '3.12'
       - name: Install dependencies
         run: >
-          pip install -r CI/requirements_fpe_masks.txt
+          pip install -r CI/fpe_masks/requirements.txt
       - name: Check
         run: >
           CI/check_fpe_masks.py --token ${{ secrets.GITHUB_TOKEN }}

.github/workflows/milestone.yml

@@ -0,0 +1,58 @@
+name: Check PR milestone
+
+on:
+  pull_request_target:
+    types: [milestoned, demilestoned, opened, reopened]
+    branches:
+      - main
+
+jobs:
+  check_milestone:
+    if: ${{ github.event.issue.pull_request || github.event.pull_request }}
+
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: "Check for milestone on PR"
+        uses: actions/github-script@v7
+        with:
+          script: |
+            let milestone = context.payload.pull_request.milestone;
+
+            if(context.payload.action === 'opened' || context.payload.action === 'reopened') {
+              if(milestone !== null) {
+                  core.notice(`Milestone is ${milestone.title}`);
+              } else {
+                const milestones = await github.rest.issues.listMilestones({
+                  owner: context.repo.owner,
+                  repo: context.repo.repo,
+                  state: "open"
+                });
+                for (const default_milestone of milestones.data) {
+                  if (default_milestone.title === "next") {
+                    core.notice(`No milestone set, setting default milestone: ${default_milestone.title}`);
+
+                    await github.rest.issues.update({
+                      owner: context.repo.owner,
+                      repo: context.repo.repo,
+                      issue_number: context.issue.number,
+                      milestone: default_milestone.number
+                    });
+                    return;
+                  }
+                }
+
+                core.warning("Could not find default milestone named 'next'");
+
+              }
+
+            }
+            else {
+              if(milestone !== null) {
+                  core.notice(`Milestone is ${milestone.title}`);
+              } else {
+                  core.setFailed("No milestone: Please add a version milestone");
+              }
+            }

.github/workflows/update-pip-requirements.yml

@@ -0,0 +1,76 @@
+name: Update Pip Requirements
+
+on:
+  workflow_dispatch: # Allow running on-demand
+  schedule:
+    # Runs every Sunday at 1:23 UTC
+    - cron: '23 1 * * 0'
+
+jobs:
+  update-pip-requirements:
+    # This action checks all monitored (specified in `folder_list` below) requirements.in
+    # files and generates a new requirements.txt file with pip-compile. If any
+    # requirements changed, a PR is created with the changes.
+    runs-on: ubuntu-latest
+    env:
+      # This branch will receive updates each time the workflow runs
+      # It doesn't matter if it's deleted when merged, it'll be re-created
+      BRANCH_NAME: auto-dependency-upgrades
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.12
+
+      - name: Install pip-tools
+        run: pip install pip-tools
+
+      - name: Compile all requirements.txt
+        run: |
+          # Update this list after adding/removing requirements-files
+          folder_list=(
+            CI/clang_tidy
+            CI/fpe_masks
+            docs
+            Examples/Python/tests/
+            Examples/Scripts
+          )
+          for folder in "${folder_list[@]}"; do
+            pip-compile "${folder}/requirements.in" > "${folder}/requirements.txt"
+          done
+
+      - name: Detect changes
+        id: changes
+        run:
+          # This output boolean tells us if the dependencies have actually changed
+          echo "count=$(git status --porcelain=v1 2>/dev/null | wc -l)" >> $GITHUB_OUTPUT
+
+      - name: Commit & push changes
+        # Only push if changes exist
+        if: steps.changes.outputs.count > 0
+        run: |
+          git config user.name github-actions
+          git config user.email [email protected]
+          git add .
+          git commit -m "Weekly Update: Regenerate requirements.txt"
+          git push -f origin ${{ github.ref_name }}:$BRANCH_NAME
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Open pull request if needed
+        if: steps.changes.outputs.count > 0
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        # Only open a PR if the branch is not attached to an existing one
+        run: |
+          PR=$(gh pr list --head $BRANCH_NAME --json number -q '.[0].number')
+          if [ -z $PR ]; then
+            gh pr create \
+            --head $BRANCH_NAME \
+            --title "chore: automated python requirements upgrades" \
+            --body "Full log: https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}"
+          else
+            echo "Pull request already exists, won't create a new one."
+          fi

.zenodo.json

@@ -112,11 +112,15 @@
       "affiliation": "CERN / University of Amsterdam",
       "name": "Stephen Nicholas Swatman",
       "orcid": "0000-0002-3747-3229"
-    }
+    },
     {
       "affiliation": "CERN / TU Wien",
       "name": "Felix Russo",
       "orcid": "0009-0005-8975-2245"
+    },
+    {
+      "affiliation": "UC Berkeley",
+      "name": "Carlo Varni"
     }
   ],
   "access_right": "open",

AUTHORS

@@ -21,3 +21,4 @@ The following people have contributed to the project (in alphabetical order):
 - Andreas Stefl, CERN, TU Wien
 - Stephen Nicholas Swatman, CERN, University of Amsterdam
 - Roman Urmanov, Weizmann Institute of Science
+- Carlo Varni, UC Berkeley

CI/clang_tidy/requirements.txt

@@ -4,41 +4,41 @@
 #
 #    pip-compile CI/clang_tidy/requirements.in
 #
-annotated-types==0.6.0
+annotated-types==0.7.0
     # via pydantic
 appdirs==1.4.4
     # via fs
-codereport==0.3.2
+codereport==0.4.0
     # via -r CI/clang_tidy/requirements.in
 fs==2.4.16
     # via codereport
-jinja2==3.1.2
+jinja2==3.1.4
     # via codereport
 markdown-it-py==3.0.0
     # via rich
-markupsafe==2.1.3
+markupsafe==3.0.2
     # via jinja2
 mdurl==0.1.2
     # via markdown-it-py
-pydantic==2.5.2
+pydantic==2.9.2
     # via -r CI/clang_tidy/requirements.in
-pydantic-core==2.14.5
+pydantic-core==2.23.4
     # via pydantic
-pygments==2.17.2
+pygments==2.18.0
     # via
     #   codereport
     #   rich
 python-slugify==6.1.2
     # via codereport
-pyyaml==6.0.1
+pyyaml==6.0.2
     # via -r CI/clang_tidy/requirements.in
-rich==13.7.0
+rich==13.9.4
     # via -r CI/clang_tidy/requirements.in
 six==1.16.0
     # via fs
 text-unidecode==1.3
     # via python-slugify
-typing-extensions==4.8.0
+typing-extensions==4.12.2
     # via
     #   pydantic
     #   pydantic-core

CI/fpe_masks/requirements.txt

@@ -0,0 +1,62 @@
+#
+# This file is autogenerated by pip-compile with Python 3.12
+# by the following command:
+#
+#    pip-compile CI/fpe_masks/requirements.in
+#
+aiohappyeyeballs==2.4.3
+    # via aiohttp
+aiohttp==3.11.6
+    # via -r CI/fpe_masks/requirements.in
+aiosignal==1.3.1
+    # via aiohttp
+attrs==24.2.0
+    # via aiohttp
+cffi==1.17.1
+    # via cryptography
+click==8.1.7
+    # via typer
+cryptography==43.0.3
+    # via pyjwt
+frozenlist==1.5.0
+    # via
+    #   aiohttp
+    #   aiosignal
+gidgethub==5.3.0
+    # via -r CI/fpe_masks/requirements.in
+idna==3.10
+    # via yarl
+markdown-it-py==3.0.0
+    # via rich
+mdurl==0.1.2
+    # via markdown-it-py
+multidict==6.1.0
+    # via
+    #   aiohttp
+    #   yarl
+propcache==0.2.0
+    # via
+    #   aiohttp
+    #   yarl
+pycparser==2.22
+    # via cffi
+pygments==2.18.0
+    # via rich
+pyjwt[crypto]==2.10.0
+    # via
+    #   gidgethub
+    #   pyjwt
+rich==13.9.4
+    # via
+    #   -r CI/fpe_masks/requirements.in
+    #   typer
+shellingham==1.5.4
+    # via typer
+typer==0.13.1
+    # via -r CI/fpe_masks/requirements.in
+typing-extensions==4.12.2
+    # via typer
+uritemplate==4.1.1
+    # via gidgethub
+yarl==1.17.2
+    # via aiohttp

CITATION.cff

@@ -89,6 +89,9 @@ authors:
   family-names: Russo
   affiliation: CERN / TU Wien
   orcid: https://orcid.org/0009-0005-8975-2245
+- given-names: Carlo
+  family-names: Varni
+  affiliation: UC Berkeley
 version: 10.0.0
 date-released: 2021-07-28
 repository-code: https://github.com/acts-project/acts