Started dockerizing application

adbartni · Mar 31, 2021 · ac87835 · ac87835
1 parent 9af04c7
commit ac87835
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Showing 4 changed files with 19 additions and 2 deletions.
diff --git a/.gitignore b/.gitignore
@@ -13,3 +13,4 @@ nilearn_cache/
 __pycache__/
 .scratch/
 venv/
+venv-donut/
diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -1,3 +1,3 @@
 {
-    "python.pythonPath": "/home/anacadmin/anaconda3/bin/python"
+    "python.pythonPath": "venv-donut/bin/python"
 }
diff --git a/Dockerfile b/Dockerfile
@@ -0,0 +1,16 @@
+FROM registry.bnac.net/fix
+
+RUN apt update ; apt install -y python3 python3-pip
+
+ADD main.py /opt/fmri_pipeline/main.py
+ADD LICENSE /opt/fmri_pipeline/LICENSE
+ADD preprocessing /opt/fmri_pipeline/preprocessing
+ADD collect_raw_data /opt/fmri_pipeline/collect_raw_data
+ADD connectome_analyses /opt/fmri_pipeline/connectome_analyses
+ADD README.md /opt/fmri_pipeline/README.md
+ADD requirements.txt /opt/fmri_pipeline/requirements.txt
+
+ENV PATH="/opt/fmri_pipeline:${PATH}"
+
+RUN pip3 install wheel
+RUN pip3 install -r /opt/fmri_pipeline/requirements.txt
diff --git a/main.py b/main.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 
 import begin
 import os