clean up repository to minimum code and data

aekendig · Jan 27, 2022 · 2f162c0 · 2f162c0
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Showing 16 changed files with 102 additions and 225,959 deletions.
diff --git a/README.html b/README.html
diff --git a/README.md b/README.md
@@ -17,7 +17,6 @@ Code and data for horizon scan of invasive plant threats to Florida. This reposi
 |risk_scores_analys.R             |R script to evaluate final risk scores |
 |pathways_process.R               |R script to process pathways to introduction data |
 |taxa_list_processing.R           |R script to create list used for rapid risk assessments from an initial list |
-|taxonomic_method_comparison.R    |R script to check consistency of taxa lists produced by original (initial commit) and revised taxonomic methods |
 
 |data                                                       |description |
 |:----------------------------------------------------------|:---------------------------------------------------------------|

diff --git a/code/risk_score_analysis.R b/code/risk_score_analysis.R
@@ -15,6 +15,7 @@ library(cowplot)
 # import data
 hs <- read_csv("intermediate-data/horizon_scan_plants_full_reviews_080321.csv")
 gbif_keys <- read_csv("intermediate-data/gbif_taxonkeys_full_cabi_list_cleaned_062221.csv")
+# above obtained using the same methods as gbif_taxonkeys_full_cabi_list_cleaned_011522.csv in taxa_list_process.R
 
 
 #### edit data ####

diff --git a/code/taxonomy_method_comparison.R b/code/taxonomy_method_comparison.R