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Making Magnipy User-FRIENDly#1

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LimbeckKat merged 71 commits intomainaidos-lab/magnipy:mainfrom es-tutorialsaidos-lab/magnipy:es-tutorialsCopy head branch name to clipboardJan 10, 2025

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Commits

Commits on Nov 21, 2024

• update readme structure

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• initialize gitignore

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• correct paper affiliation

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Commits on Nov 22, 2024

• Added diversity tutorial

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• Reformatted

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• Merge pull request #3 from aidos-lab/diversipy_tutorial

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• removing Latex dependency

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• remove notebooks from git ignore

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• first draft of diversipy_tutorial

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• comments addressed, still error with get_common_scales()

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• toy data for magnipy tutorial added, colors changed for X1-X4 to match plots

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Commits on Nov 23, 2024

• diversipy tutorial 2nd draft

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Commits on Nov 25, 2024

• plotting for distance and similarity matrices

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• first draft magnipy tutorial (todo: magnitude weight)

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Commits on Nov 26, 2024

• plotting magnitude weights

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• adding magnitude weights section, removing diversity summaries

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• full draft magnipy tutorial

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• formatting edits/reorder

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• restructuring to condense

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Commits on Nov 27, 2024

• plotting for magnitude weights

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• formatting magnitude weight plot

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• typo

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• finding more informative t values for magnitude weight plotting

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• magnipy draft for review

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• table for magnitude functions

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• round of edits to consolidate text

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Commits on Dec 2, 2024

• including pairwise=False and updating text

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• update readme to better match tutorials

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• update to dependencies section

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• add mode dropping/collapse figure

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• update readme

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  e46f473

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• Added mode dropping

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• Fixed formatting

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Commits on Dec 3, 2024

• take out mode dropping/collapse

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• gif animations

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• mode dropping tutorial

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• updates for mode dropping tutorial

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• mode-dropping edits

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• added figure from paper

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• added supplementary demos

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• small edits

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• rearranging assets

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• changing asset paths

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• adding pipeline figure

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Commits on Dec 4, 2024

• Adjusted mode dropping tutorial

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Commits on Dec 5, 2024

• updating animations

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• full draft of mode_dropping tutorial (changed to use Diversipy instead of Magnipy, more code explanation)

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• functions to go along with mode_dropping tutorial

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• added sneak peek for mode dropping

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• small edit to heading size

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• rename chart from paper

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• added plots for mode collapse

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• added methods to help with mode collapse simulation

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• added mode collapse

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• Adjusted magnipy tutorial

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• Merge branch 'es-tutorials' of https://github.com/aidos-lab/magnipy into es-tutorials

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Commits on Dec 6, 2024

• get rid of print statements

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• added equations

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Commits on Dec 11, 2024

• Adjusted tutorial

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• Adjusted tutorials

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• Added tutorial_data to utils

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Commits on Jan 9, 2025

• readme

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• removing dependency on Diversipy import

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• inverting heatmap coloring

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• final edits on diversipy tutorial

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• final edits on magnipy tutorial

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• final edits on mode_dropping tutorial

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• fixed mode_collapse gifs

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• Updated reference

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• Updated formatting

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Commits on Jan 10, 2025

• Merge branch 'main' into es-tutorials

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