Skip to content

0.6.2
Compare
Choose a tag to compare
@akikuno akikuno released this 14 Sep 02:12
· 70 commits to main since this release
0.6.2
07cee1a
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

New Features

Core Enhancements

  • Enhanced cstag.to_vcf to support multiple cs_tags (list[str]). This update introduces additional headers and content for better data representation:

    ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
    ##INFO=<ID=RD,Number=1,Type=Integer,Description="Depth of Reference Allele">
    ##INFO=<ID=AD,Number=1,Type=Integer,Description="Depth of Alternate Allele">
    ##INFO=<ID=VAF,Number=A,Type=Float,Description="Variant Allele Frequency (AD/DP)">

  • Introduced cstag.to_sequence for reconstructing subsequences.

Supplementary Features

  • Added validate_cs_tag for CS tag validation.
  • Introduced validate_pos for position validation.
  • Implemented normalize_positions within cstag.consensus.
  • Added Vcf and VcfInfo classes to to_vcf.

Maintenance Updates

  • Revised normalize_read_lengths to eliminate deque output.
  • Debugged to_html to properly handle =N.
Assets 2
Loading