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@akikuno akikuno released this 03 Oct 08:17
· 43 commits to main since this release
bac87ad
  • Made changes in consensus to not consider N due to insufficient read numbers.
cs_tags = [
    '=A*cg=G+aa=T-ac=G',
    '*cg=G+aa=T-ac=G',
    '=G-t=ACG'
    ]
positions = [10, 11, 12]

cstag.consensus(cs_tags, positions)
# result:   =N*cg=G+aa=T-ac=G
# expected: =A*cg=G+aa=T-ac=G
  • Modified consensus to split the deletion tags.
    • Added expand_deletion_tags to split the deletions.
cs_tags = [
    '=A*cg=G+aa=T-ac=G',
    '*cg=G+aa=T-ac=G',
    '=G-t=ACG'
    ]
positions = [10, 11, 12]

cstag.consensus(cs_tags, positions)
# result:   =N*cg=G+aa=T-ac=GN
# expected: =N*cg=G+aa=T-ac=G
  • Tried other libraries as installing weasyprint is challenging on mac and windows. However, continued using weasyprint as CSS was not applied.
    • fpdf2
    • borb
    • xhtml2pdf