R docker refactor for lab sessions #122

griff-rees · 2024-01-18T18:59:22Z

This branch includes the docker deploy used for the workshop in December and subsequent configurations for potential jupyterhub deploys.

Adding WIP markdowns

…clim-recal into LCAT.data

Merge branch 'LCAT.data' of https://github.com/alan-turing-institute/clim-recal into LCAT.data # Conflicts: # R/bias-correction-methods/apply_qmapQuant_to_crpd_df_fn.R

… assesment

Removing files no longer needed

…docs

andrewphilipsmith

Looks good to me. There are a couple of minor typos and docstring improvements that would be worth fixing, but otherwise ready to merge. 🎉

python/load_data/data_loader.py

python/resampling/resampling_hads.py

python/utils.py

andrewphilipsmith

LGTM

RuthBowyer added 30 commits August 15, 2023 08:51

Renaming file for better accuracy

7dd6114

Adding WIP markdowns

Renaming file for clarity

6d8875b

Updating func and appling BC qmapQuant to three cities

e9f7a85

Moving some files to new folder

687eb12

Script updates for grouping etc

05ad4c9

Correcting precip error in Hads read in

1695c31

Correcting precip error in Hads read in

ad2845b

Merge branch 'LCAT.data' of https://github.com/alan-turing-institute/…

17cca21

…clim-recal into LCAT.data

Updating fnc for scotland

b77383f

Updating fnc for scotland

0c828f7

Start the BC for LCAT

fd5642b

Merge branch 'LCAT.data' of https://github.com/alan-turing-institute/clim-recal into LCAT.data # Conflicts: # R/bias-correction-methods/apply_qmapQuant_to_crpd_df_fn.R

Including fnc for Scotland

470fb08

Deriving seasonal means

dff994f

Loading obs data

c15beab

Simplifying code - this might be a conflict later though

89df88e

Adding metrics, sorting out fig generation

b195855

Adding in all runs rather than one and extracting rasters for general…

4e8be76

… assesment

Adding loops to deal with the four runs simultaneously

049e749

Updating with more figs

5791e97

conversion of val dfs to run over all runs

bd9d793

update read_crop.fn.R - this could have been pushed already?

894efea

Added density plot, rmse for each run

68d7aca

Cleaning up files for LCAT

282a75e

Updates for R pipeline

f90ac12

Adding pre-processing to within method (qmap in this eg)

be16f8f

Removing files no longer needed

Sep'ing script for conversion to df

879e608

updating for easier R pipeline

44175ac

Update to script to convert city crops to data frame

4ca30d4

Add notes and fixing function

580d36f

Small updated to wet.day and corrected related issue preventing run

2e6fa1d

spool added 2 commits January 26, 2024 11:33

fix(ci): remove svg coverage render to test doc render workflow

d7fbfa6

fix(ci): drop svg doc render for testing

d9947e2

griff-rees mentioned this pull request Jan 26, 2024

Update.rpipeline #109

Closed

spool added 3 commits January 26, 2024 15:29

fix(doc): improve comments in rstudio/Dockerfile

ced234c

feat(doc): add docker docs

ef05e11

fix(test): remove commented, refactored debiased tests

bd3efad

griff-rees mentioned this pull request Jan 26, 2024

Assessment notebook for December workshop #97

Closed

spool added 10 commits January 27, 2024 04:56

fix(ci): add coverage.svg back into pytest workflow

656d414

fix(ci): update PYTHON_MODULE_FOLDER and CI push/pull branches

205b268

fix(ci): update CI push/pull branches

e444fbb

feat(ci): update pre-commit-ci/lite-action to v3.0.0

7f97bd2

fix(ci): set pre-commit-ci/lite to main

6fc4224

fix(ci): FIX set pre-commit-ci/lite to main

96f656d

fix(ci): refactor doc CI via miniconda

fcfffc0

fix: add r-quarto back in environment.yml

fc94369

fix(refactor): refactor docker deploy and improve related code and …

11b7eec

…docs

fix(ci): rewrite compose/jupyter/Dockerfile to fix env activation

15cab81

griff-rees added this to the Incorporate workshop feedback in to finalise pipeline milestone Feb 2, 2024

fix(doc): improve python/resampling/resampling_hads.py documentation

896f843

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andrewphilipsmith approved these changes Feb 5, 2024

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spool added 2 commits February 5, 2024 13:43

fix(doc): fix typos in data_loader.py and utils.py

c517aac

fix(doc): improve resampling_hads and _quarto.yml config

c47f4f9

andrewphilipsmith approved these changes Feb 5, 2024

View reviewed changes

griff-rees merged commit 822adc5 into main Feb 5, 2024
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griff-rees deleted the r-docker-refactor branch February 5, 2024 15:30

This was referenced Feb 5, 2024

Lcat.data #57

Closed

Merge workshop branches #105

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griff-rees mentioned this pull request Feb 5, 2024

Fix results from the Python/bash pipeline #100

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andrewphilipsmith mentioned this pull request Feb 6, 2024

Add / Update docstrings for all scripts in final pipeline #53

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R docker refactor for lab sessions #122

R docker refactor for lab sessions #122

griff-rees commented Jan 18, 2024

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R docker refactor for lab sessions #122

R docker refactor for lab sessions #122

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griff-rees commented Jan 18, 2024

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