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Remove unnecessary check in critical path of MatchHashesAndScoreQuery #169

Remove unnecessary check in critical path of MatchHashesAndScoreQuery

Remove unnecessary check in critical path of MatchHashesAndScoreQuery #169

Workflow file for this run

name: "CI"
on:
pull_request:
branches:
- main
concurrency:
group: ${{ github.ref }}
cancel-in-progress: true
jobs:
show-github-context:
name: "Show Github Context"
timeout-minutes: 1
runs-on:
- ubuntu-22.04
env:
GITHUB_CONTEXT: ${{ toJson(github) }}
steps:
- run: echo $GITHUB_CONTEXT
test-jvm:
name: "Test JVM Code"
runs-on:
- ubuntu-22.04
steps:
- uses: actions/checkout@v3
timeout-minutes: 1
- uses: actions/setup-java@v3
timeout-minutes: 1
with:
distribution: 'adopt'
java-version: 19
cache: 'sbt'
- uses: arduino/setup-task@v1
timeout-minutes: 1
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
- name: Increase MMAP Limits
timeout-minutes: 1
run: sudo sysctl -w vm.max_map_count=262144
- name: Lint
timeout-minutes: 5
run: task jvmLint
- name: Compile
timeout-minutes: 5
run: task jvmCompile
- name: Assemble
timeout-minutes: 1
run: task jvmAssemble
- name: Run Unit Tests
timeout-minutes: 1
run: task jvmUnitTest
- name: Run Cluster
timeout-minutes: 5
run: task dockerRunTestingCluster
- name: Run Integration Tests
timeout-minutes: 20
run: task jvmIntegrationTest
- name: Cluster Logs
timeout-minutes: 1
if: always()
run: task dockerLogTestingCluster
- name: Stop Cluster
timeout-minutes: 1
if: always()
run: task dockerStopTestingCluster
test-python:
name: Test Python Client Code
runs-on:
- ubuntu-22.04
steps:
- uses: actions/checkout@v3
timeout-minutes: 1
- uses: actions/setup-java@v3
timeout-minutes: 1
with:
distribution: 'adopt'
java-version: 19
cache: 'sbt'
- uses: actions/setup-python@v4
timeout-minutes: 1
with:
python-version: '3.10.8'
cache: 'pip'
- uses: arduino/setup-task@v1
timeout-minutes: 1
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
- name: Increase MMAP Limits
timeout-minutes: 1
run: sudo sysctl -w vm.max_map_count=262144
- name: Docs
timeout-minutes: 1
run: task pyDocs
- name: Run Cluster
timeout-minutes: 5
run: task dockerRunTestingCluster
- name: Test
timeout-minutes: 1
run: task pyTest
- name: Cluster Logs
timeout-minutes: 1
if: always()
run: task dockerLogTestingCluster
- name: Stop Cluster
timeout-minutes: 1
if: always()
run: task dockerStopTestingCluster
test-benchmarks:
name: Test Benchmarks
runs-on:
- ubuntu-22.04
timeout-minutes: 10
steps:
- uses: actions/checkout@v3
timeout-minutes: 1
- uses: actions/setup-java@v3
timeout-minutes: 1
with:
distribution: 'adopt'
java-version: 19
cache: 'sbt'
- uses: arduino/setup-task@v1
timeout-minutes: 1
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
- uses: actions/setup-python@v4
timeout-minutes: 1
with:
python-version: '3.10.8'
cache: 'pip'
- name: Increase MMAP Limits
timeout-minutes: 1
run: sudo sysctl -w vm.max_map_count=262144
- name: Initialize Submodule
timeout-minutes: 1
run: task annbCreateSubmodule
- name: Install Dependencies
timeout-minutes: 1
run: task annbInstallRequirements
- name: Run Cluster
timeout-minutes: 5
run: task dockerRunTestingCluster
- name: Test
timeout-minutes: 5
run: task annbTest
- name: Cluster Logs
timeout-minutes: 1
if: always()
run: task dockerLogTestingCluster
- name: Stop Cluster
timeout-minutes: 1
if: always()
run: task dockerStopTestingCluster
test-jekyll-site:
name: Test Jekyll Site
runs-on:
- ubuntu-22.04
timeout-minutes: 10
steps:
- uses: actions/checkout@v3
timeout-minutes: 1
- uses: arduino/setup-task@v1
timeout-minutes: 1
with:
repo-token: ${{ secrets.GITHUB_TOKEN }}
- name: Compile Jekyll Site
run: |
sudo chown -R runneradmin:runneradmin docs
task docsCompile
sudo chown -R runner:docker docs
ls -la docs/*