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Update create_blast_db.yml #36

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merged 1 commit into from
Jan 19, 2025
+14 −4
Merged

Update create_blast_db.yml #36

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18 changes: 14 additions & 4 deletions .github/workflows/create_blast_db.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,10 +3,16 @@ on:
pull_request:
types: [closed]
branches: [main]
workflow_dispatch:
inputs:
json_file:
description: 'Full path to JSON file (e.g., conf/WB/databases.WB.WS296.json)'
required: true
type: string

jobs:
create-blast-db:
if: github.event.pull_request.merged == true
if: github.event.pull_request.merged == true || github.event_name == 'workflow_dispatch'
runs-on: blast

steps:
Expand All @@ -16,11 +22,15 @@ jobs:
path: config
ref: ${{ github.event.pull_request.head.sha }}

- name: Get changed files
- name: Get file to process
id: changed
run: |
CHANGED_FILE=$(git -C config diff --name-only ${{ github.event.pull_request.base.sha }} ${{ github.event.pull_request.head.sha }} | grep -E '\.json$' || true)
echo "file=$CHANGED_FILE" >> $GITHUB_OUTPUT
if [ "${{ github.event_name }}" = "workflow_dispatch" ]; then
echo "file=${{ github.event.inputs.json_file }}" >> $GITHUB_OUTPUT
else
CHANGED_FILE=$(git -C config diff --name-only ${{ github.event.pull_request.base.sha }} ${{ github.event.pull_request.head.sha }} | grep -E '\.json$' || true)
echo "file=$CHANGED_FILE" >> $GITHUB_OUTPUT
fi

- name: Run BLAST DB creation
run: |
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