Change range of zygosity to GENOTerm #326
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| name: Regenerate Alliance Schema Model Artifacts | |
| on: | |
| pull_request: | |
| types: [synchronize, opened, reopened] | |
| branches: | |
| - main | |
| jobs: | |
| generate-artifacts: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| steps: | |
| - name: Install Poetry | |
| run: pipx install poetry==1.4.0 | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'poetry' | |
| - name: Install Dependencies | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --no-root | |
| - name: Setup Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '8' | |
| - name: Setup build environment | |
| run: | | |
| sudo apt update | |
| sudo apt install -y graphviz | |
| wget https://github.com/joelittlejohn/jsonschema2pojo/releases/download/jsonschema2pojo-1.0.2/jsonschema2pojo-1.0.2.tar.gz | |
| tar -xvzf jsonschema2pojo-1.0.2.tar.gz | |
| - name: Generate AGR Curation Model artifacts | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| gh pr checkout ${{ github.event.pull_request.number }} | |
| export PATH=$PATH:`pwd`/jsonschema2pojo-1.0.2/bin | |
| make clean-artifacts | |
| make -B gen-artifacts | |
| - name: Commit and push artifacts | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| shell: bash | |
| run: | | |
| if [[ $(git add -n generated/) ]]; then | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add generated/ | |
| git commit -m "Automated artifacts regeneration [skip actions]" | |
| git push | |
| else | |
| echo "No artifact changes to commit." | |
| fi |