Trying with fixed versions

requirements.txt

@@ -1,11 +1,90 @@
-urllib3
-namedlist
-inflect
-pyyaml>=4.2b1
-numpy
+annotated-types==0.6.0
+antlr4-python3-runtime==4.9.3
+bidict==0.22.1
+certifi==2024.2.2
+cffi==1.16.0
+CFGraph==0.2.1
+chardet==5.2.0
+charset-normalizer==3.3.2
+click==8.1.7
+contourpy==1.1.1
+cryptography==42.0.2
+cycler==0.12.1
+dacite==1.8.1
+dataclasses==0.6
+decorator==5.1.1
+diskcache==5.6.3
+docopt==0.6.2
+docutils==0.20.1
+exceptiongroup==1.2.0
+fonttools==4.47.2
+idna==3.6
+importlib-metadata==7.0.1
+importlib-resources==6.1.1
+inflect==7.0.0
+iniconfig==2.0.0
+isodate==0.6.1
+jaraco.classes==3.3.0
+jeepney==0.8.0
+jsobject==0.10.2
+jsonasobj==1.3.1
+jsonpath-rw==1.4.0
+jsonpickle==3.0.2
+keyring==24.3.0
+kiwisolver==1.4.5
+markdown-it-py==3.0.0
+marshmallow==3.0.0b11
+matplotlib==3.7.4
+mdurl==0.1.2
+more-itertools==10.2.0
+namedlist==1.8
+networkx==3.1
+nh3==0.2.15
+num2words==0.5.13
+numpy==1.22.0
 ontobio==2.8.22
-prefixcommons>=0.1.9
-num2words
-dacite
-psycopg2-binary
-gast==0.2.2
+packaging==23.2
+pandas==1.0.5
+pillow==10.2.0
+pkginfo==1.9.6
+plotly==5.18.0
+pluggy==1.4.0
+ply==3.11
+prefixcommons==0.1.12
+psycopg2-binary==2.9.9
+pycparser==2.21
+pydantic==2.6.1
+pydantic_core==2.16.2
+pydotplus==2.0.2
+Pygments==2.17.2
+PyJSG==0.11.10
+pyparsing==2.4.7
+PyShEx==0.8.1
+PyShExC==0.9.1
+pysolr==3.9.0
+pytest==8.0.0
+pytest-logging==2015.11.4
+python-dateutil==2.8.2
+pytz==2024.1
+PyYAML==6.0.1
+rdflib==7.0.0
+rdflib-jsonld==0.6.1
+rdflib-shim==1.0.3
+readme-renderer==42.0
+requests==2.31.0
+requests-toolbelt==1.0.0
+rfc3986==2.0.0
+rich==13.7.0
+scipy==1.10.1
+SecretStorage==3.3.3
+ShExJSG==0.8.2
+six==1.16.0
+sparqlslurper==0.5.1
+SPARQLWrapper==2.0.0
+tenacity==8.2.3
+tomli==2.0.1
+twine==4.0.2
+typing_extensions==4.9.0
+urllib3==2.2.0
+yamldown==0.1.8
+zipp==3.17.0