New info poor definition

The definition of info poor gene has been revised

Fixed ontology functions

v4.0.2

fixed ontology functions

Fixed typo

Fixed minor error

Removed recursion from ontology tools

This release adds support for larger ontologies such as CHEBI by removing recursive functions from ontology tools. The release also includes minor performance improvements to all ontology tools functions.

Support for ontologies with loops (self relationships)

The changes introduced in this release allow the code to run even when executed on ontologies with loops (self relationships). In addition, Information content values are calculated also for nodes that have one or more parents that are disconnected from the roots.

New rules to exclude predictions when experimental sentences are present

v3.2.4

fix(precanned_modules): new rules to generate experimental sentences …

Added 'is active in' sentences

Added a new template for 'is active in' and 'predicted to be active in' GOCC sentences.

New option to exclude branches from trimming

A list of term IDs can be now added to the configuration file for each data type. The specified terms and their descendants will not be trimmed and will be kept in the final description (if annotated).

Added option to load IBA annotations from MOD GAFs

v3.2.1

feat(*): updated WB pipeline and added option to load IBA from gaf files

GAF 2.2 support

Added support for GAF 2.2 with new pre-canned functions to generate sentences for each new GO relationship (fka qualifiers).