SCRUM-4603 set genetic entity association via getFullRelation (#1220)

alliance-genome · Nov 25, 2024 · 5b2ca05 · 5b2ca05
1 parent ffa748b
commit 5b2ca05
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Showing 2 changed files with 2 additions and 9 deletions.
diff --git a/...rc/main/java/org/alliancegenome/api/translators/tdf/DiseaseAnnotationToTdfTranslator.java b/...rc/main/java/org/alliancegenome/api/translators/tdf/DiseaseAnnotationToTdfTranslator.java
@@ -267,7 +267,7 @@ private static void extracted(DiseaseAnnotationDocument annotation, org.alliance
 		if (primaryAnnotation.getGeneticSex() != null) {
 			row.setGeneticSex(primaryAnnotation.getGeneticSex().getName());
 		}
-		row.setGeneticEntityAssociation(getGeneratedRelationString(primaryAnnotation.getRelation().getName(), primaryAnnotation.getNegated()));
+		row.setGeneticEntityAssociation(primaryAnnotation.getFullRelationString());
 		if (CollectionUtils.isNotEmpty(primaryAnnotation.getRelatedNotes())) {
 			row.setNote(primaryAnnotation.getRelatedNotes().stream().map(note -> {
 				String freeNote = note.getFreeText().replace("\n", " ");
@@ -305,13 +305,6 @@ private static void extracted(DiseaseAnnotationDocument annotation, org.alliance
 	}
 
 
-	private static String getGeneratedRelationString(String relation, Boolean negated) {
-		if (!negated) {
-			return relation;
-		}
-		return relation.replaceFirst("_", "_not_");
-	}
-
 	private DiseaseDownloadRow getDiseaseDownloadRow(DiseaseAnnotation annotation, PrimaryAnnotatedEntity entity, PublicationJoin join, Gene homologousGene) {
 		DiseaseDownloadRow row = getBaseDownloadRow(annotation, join, homologousGene);
 

diff --git a/pom.xml b/pom.xml
@@ -32,7 +32,7 @@
 		<quarkus.platform.artifact-id>quarkus-bom</quarkus.platform.artifact-id>
 		<quarkus.platform.group-id>io.quarkus.platform</quarkus.platform.group-id>
 		<quarkus.platform.version>${quarkus.version}</quarkus.platform.version>
-		<curation.version>v0.35.0</curation.version>
+		<curation.version>v0.35.1</curation.version>
 		<!-- <curation.version>0.0.0-SNAPSHOT</curation.version> -->
 	</properties>
 	<dependencyManagement>