adjusting action to read url from environment variables #20
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| name: model-install | |
| on: | |
| push: | |
| branches: [ mongo_upsert ] | |
| pull_request: | |
| branches: mongo_upsert | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| needs: check | |
| - name: Clone allometric/allometric. | |
| run: | | |
| git clone https://github.com/allometric/allometric.git | |
| - name: Update database | |
| env: | |
| MONGODB_URL_DEV: ${{secrets.MONGODB_URL_DEV}} | |
| run: | | |
| devtools::install("./allometric", reload = FALSE); | |
| library(allometric); | |
| devtools::load_all("."); | |
| url <- Sys.getenv("MONGODB_URL_DEV"); | |
| model_con <- get_model_con(url); | |
| pub_con <- get_pub_con(url); | |
| update_con <- get_update_con_con(url); | |
| update_db(pub_con, model_con, update_con, last_commit = "abbbc1b") | |
| warnings(); | |
| shell: Rscript {0} | |
| - uses: stefanzweifel/git-auto-commit-action@v5 | |
| with: | |
| branch: main | |
| commit_message: Updating models.RDS | |
| file_pattern: '*.RDS' |