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v3.4.0

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@github-actions github-actions released this 19 May 09:36
v3.4.0

Added

  • strict argument to Gene.translate to control translation of ambiguous codons with unambiguous translation (#54).
  • strict_translation argument to Genes.write_genbank and Genes.write_translation.
  • Support for translation tables 26 to 33 in Gene.translate.
  • Support for translation tables 26, 29, 30, 32 and 33 in GeneFinder.train.
  • Genes.score property to count the total score of all extracted genes.
  • full_id parameter to Genes.write_gff, Genes.write_translation and Genes.write_genes to control the ID field written for each gene (#53).

Changed

  • Gene.translate now raises a warning when called with a translation table incompatible with the training info.

Fixed

  • Bug in code for masking trailing nucleotides (#55).