Update README.md

README.md

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-# NINA ebook template
-Template repository for creating a NINA-themed book powered by Quarto and Rendered by GitHub Actions onto GitHub Pages.
-The template has borrowed heavily from Jens Åström's work on the [Quarto template for NINA reports](https://github.com/NINAnor/quarto_nina_report).
-Also a thanks to Niccolò Cantù for the scss file with the NINA color scheme.
-
-Note: When clicking 'Use this template', remember to copy all branches, to include the GH-pgaes branch. If you forget this, see the inforamtin at the bottom of this page for how to initiate GitHub actions. 
-
-## Overview
-
-The repository holds: 
-
-- [`.github/workflows/quarto-render.yml`](.github/workflows/quarto-render.yml): Install, setup, and render a Quarto book using R and Python
-- [`_quarto.yml`](_quarto.yml): Setup the properties of the book in a minimal fashion (for more options see [Quarto: Book Structure](https://quarto.org/docs/books/book-structure.html))
-- [`index.qmd`](index.qmd): Welcome page
-
-Additional files:
-
-- [`requirements.txt`](requirements.txt): List of Python Packages to install
-- [`DESCRIPTION`](DESCRIPTION): List of R Packages using the standard DESCRIPTION file to install with `pak`.
-
-## Publishing with GitHub Actions
-
-Included in the repository is a custom GitHub Action that will automatically render and deploy the book onto GitHub Pages. 
-Before the first run of the GitHub Action, please make sure to use locally in terminal the following:
-
-```sh
-quarto publish gh-pages
-```
-
-This command [initializes the `gh-pages` branch and turns on GitHub Pages for the repository](https://quarto.org/docs/publishing/github-pages.html#source-branch).
-
-If you do not run this command before the first GitHub Action is triggered, you will likely encounter the following error message in the build log:
-
-```sh
-ERROR: No _publish.yml file available (_publish.yml specifying a destination required for non-interactive publish)
-```
-
-To avoid this issue, please make sure to run the GitHub Action locally so that GitHub can render and publish your Quarto document after every push to the repository.
+Years: 2017-2022
+Main response variable: moss height
+Main explanatory variables: Disturbance category, yearly climate variables, water table depth
+
+Species data only for 2020-2022
+18 quadrats 2017-2020, each with its own adjacent water table well; 28 quadrats for 2021 and 2022
+Water table depth for all years, but maybe some data missing from autumn 2019.
+Climate data from local weather stations.
+
+_Nr 29 and 30 should be exluded from 2021 and 2022_
+
+`data/growthData.xlsx`
+Tabs: one per year. Combine these with rbind()
+Columns:
+- **ID**. Unique for each pin, but not each measurement. _old/new_ means the pin has been replaces, and you cannot compare them.
+- **Plot_no**. Vegetation quadrats, 1-28(-30).
+- **Pin_nr**. 1-16, unique within each quadrat. Cranked wire / Shpagnum brush.
+- **Treatment**.
+  - M = intact bog.
+  - T = near peat exatraction site (T1 = 5 m,  and T2 = 15 meters away)
+  - R = near ditch (R1 = 5 m away; R2 = 15 m away)
+  - K = edge of mire, adjacent to grassland
+  - Hollow
+  - Hummock
+
+M, T, R, and K are all homogeneous bog lawn.
+
+Hollow and Hummock are microtopographic variation, and should be moved to another column. 
+They are located close to the centre of the bog, but it might not work to class them as M.
+Hollows are not found close to ditches and other hydrological disturbances.
+
+- **HeigthSPRING_***
+  - W = west
+  - E = east
+  - 1,2 and 3 refers to repeated measured on the same pin + direction combination, done by different people, or by the same person but from north and south.
+
+- **HeigthFALL_***
+  - same as above
+- **HeightSUMMER_***
+  - only for 2018 and 2019
+
+- **Date***
+  - dd.mm.yyyy
+- **Observer***
+- **Notes***
+- **Comments***
+
+
+`data/*shp`
+- grøfter
+- hostamyra_myrmassiv
+- torvtak
+- vegetasjonsruter19-30
+- veipunkter_vannbrønner_ruter_2017
+