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Design Doc: Rust Library Shopping
Andy Pohl edited this page Apr 1, 2024
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In terms of reading FASTA input, there are two candidates:
Right now I'm leaning towards noodles-fasta, because there's an async reader and who knows maybe the indexed reader could be useful too.
The choice of output could be Wiggle. BedGraph isn't a good choice because it's better for sparse signal, and symcurve will be quite dense. D4 was promising but it doesn't appear to be a maintained project anymore. bigWig is a good way to go and there seems to be a good lib for this called bigtools.