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apes-suite · Nov 12, 2024 · 918d9d2 · 918d9d2
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diff --git a/index.html b/index.html
@@ -164,7 +164,7 @@ <h3>Derived Types</h3>
             <p class="text-end">
               Documentation generated by
               <a href="https://github.com/Fortran-FOSS-Programmers/ford">FORD</a>
- on 2024-11-11T19:33:14.564359             </p>
+ on 2024-11-12T12:18:32.156878+0000             </p>
           </div>
         </div>
         <br>

diff --git a/interface/calc_ms_diff_matrix_from_moledens.html b/interface/calc_ms_diff_matrix_from_moledens.html
@@ -166,33 +166,33 @@ <h3 class="card-title">Called by</h3>
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 <text text-anchor="middle" x="491.5" y="-9.6" font-family="Helvetica,sans-Serif" font-size="10.50">calc_ms_diff_matrix_from_moledens</text>
 </g>
-<!-- proc~mus_calc_ms_diffmatrix_single~2 -->
+<!-- proc~mus_calc_ms_diffmatrix_single -->
 <g id="interface~~calc_ms_diff_matrix_from_moledens~~CalledByGraph_node2" class="node">
-<title>proc~mus_calc_ms_diffmatrix_single~2</title>
-<g id="a_interface~~calc_ms_diff_matrix_from_moledens~~CalledByGraph_node2"><a xlink:href="../proc/mus_calc_ms_diffmatrix_single~2.html" xlink:title="mus_calc_MS_DiffMatrix_single">
+<title>proc~mus_calc_ms_diffmatrix_single</title>
+<g id="a_interface~~calc_ms_diff_matrix_from_moledens~~CalledByGraph_node2"><a xlink:href="../proc/mus_calc_ms_diffmatrix_single.html" xlink:title="mus_calc_MS_DiffMatrix_single">
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 <text text-anchor="middle" x="264.5" y="-9.6" font-family="Helvetica,sans-Serif" font-size="10.50" fill="white">mus_calc_MS_DiffMatrix_single</text>
 </a>
 </g>
 </g>
-<!-- proc~mus_calc_ms_diffmatrix_single~2&#45;&gt;interface~calc_ms_diff_matrix_from_moledens -->
+<!-- proc~mus_calc_ms_diffmatrix_single&#45;&gt;interface~calc_ms_diff_matrix_from_moledens -->
 <g id="interface~~calc_ms_diff_matrix_from_moledens~~CalledByGraph_edge1" class="edge">
-<title>proc~mus_calc_ms_diffmatrix_single~2&#45;&gt;interface~calc_ms_diff_matrix_from_moledens</title>
+<title>proc~mus_calc_ms_diffmatrix_single&#45;&gt;interface~calc_ms_diff_matrix_from_moledens</title>
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 </g>
-<!-- interface~mus_calc_ms_diffmatrix~2 -->
+<!-- interface~mus_calc_ms_diffmatrix -->
 <g id="interface~~calc_ms_diff_matrix_from_moledens~~CalledByGraph_node3" class="node">
-<title>interface~mus_calc_ms_diffmatrix~2</title>
-<g id="a_interface~~calc_ms_diff_matrix_from_moledens~~CalledByGraph_node3"><a xlink:href="../interface/mus_calc_ms_diffmatrix~2.html" xlink:title="mus_calc_MS_DiffMatrix">
+<title>interface~mus_calc_ms_diffmatrix</title>
+<g id="a_interface~~calc_ms_diff_matrix_from_moledens~~CalledByGraph_node3"><a xlink:href="../interface/mus_calc_ms_diffmatrix.html" xlink:title="mus_calc_MS_DiffMatrix">
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 <text text-anchor="middle" x="70" y="-9.6" font-family="Helvetica,sans-Serif" font-size="10.50" fill="white">mus_calc_MS_DiffMatrix</text>
 </a>
 </g>
 </g>
-<!-- interface~mus_calc_ms_diffmatrix~2&#45;&gt;proc~mus_calc_ms_diffmatrix_single~2 -->
+<!-- interface~mus_calc_ms_diffmatrix&#45;&gt;proc~mus_calc_ms_diffmatrix_single -->
 <g id="interface~~calc_ms_diff_matrix_from_moledens~~CalledByGraph_edge2" class="edge">
-<title>interface~mus_calc_ms_diffmatrix~2&#45;&gt;proc~mus_calc_ms_diffmatrix_single~2</title>
+<title>interface~mus_calc_ms_diffmatrix&#45;&gt;proc~mus_calc_ms_diffmatrix_single</title>
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@@ -356,7 +356,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-d_ij_out~3"></span>
+              <span class="anchor" id="variable-d_ij_out~2"></span>
               real(kind=c_double),
             </td>
 <td>intent(out),</td>
@@ -392,7 +392,7 @@ <h3>Arguments</h3>
             <p class="text-end">
               Documentation generated by
               <a href="https://github.com/Fortran-FOSS-Programmers/ford">FORD</a>
- on 2024-11-11T19:33:14.564359             </p>
+ on 2024-11-12T12:18:32.156878+0000             </p>
           </div>
         </div>
         <br>

diff --git a/interface/calc_ms_diff_matrix_from_molefrac.html b/interface/calc_ms_diff_matrix_from_molefrac.html
@@ -222,7 +222,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-d_ij_out~2"></span>
+              <span class="anchor" id="variable-d_ij_out"></span>
               real(kind=c_double),
             </td>
 <td>intent(out),</td>
@@ -258,7 +258,7 @@ <h3>Arguments</h3>
             <p class="text-end">
               Documentation generated by
               <a href="https://github.com/Fortran-FOSS-Programmers/ford">FORD</a>
- on 2024-11-11T19:33:14.564359             </p>
+ on 2024-11-12T12:18:32.156878+0000             </p>
           </div>
         </div>
         <br>

diff --git a/interface/calc_therm_factor_loc.html b/interface/calc_therm_factor_loc.html
@@ -166,33 +166,33 @@ <h3 class="card-title">Called by</h3>
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 <text text-anchor="middle" x="439" y="-9.6" font-family="Helvetica,sans-Serif" font-size="10.50">calc_therm_factor_loc</text>
 </g>
-<!-- proc~mus_calc_thermfactor_single~2 -->
+<!-- proc~mus_calc_thermfactor_single -->
 <g id="interface~~calc_therm_factor_loc~~CalledByGraph_node2" class="node">
-<title>proc~mus_calc_thermfactor_single~2</title>
-<g id="a_interface~~calc_therm_factor_loc~~CalledByGraph_node2"><a xlink:href="../proc/mus_calc_thermfactor_single~2.html" xlink:title="mus_calc_thermFactor_single">
+<title>proc~mus_calc_thermfactor_single</title>
+<g id="a_interface~~calc_therm_factor_loc~~CalledByGraph_node2"><a xlink:href="../proc/mus_calc_thermfactor_single.html" xlink:title="mus_calc_thermFactor_single">
 <polygon fill="#d9534f" stroke="#d9534f" points="338,-24 169,-24 169,0 338,0 338,-24"/>
 <text text-anchor="middle" x="253.5" y="-9.6" font-family="Helvetica,sans-Serif" font-size="10.50" fill="white">mus_calc_thermFactor_single</text>
 </a>
 </g>
 </g>
-<!-- proc~mus_calc_thermfactor_single~2&#45;&gt;interface~calc_therm_factor_loc -->
+<!-- proc~mus_calc_thermfactor_single&#45;&gt;interface~calc_therm_factor_loc -->
 <g id="interface~~calc_therm_factor_loc~~CalledByGraph_edge1" class="edge">
-<title>proc~mus_calc_thermfactor_single~2&#45;&gt;interface~calc_therm_factor_loc</title>
+<title>proc~mus_calc_thermfactor_single&#45;&gt;interface~calc_therm_factor_loc</title>
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 <polygon fill="#000000" stroke="#000000" points="363.93,-15.5 373.93,-12 363.93,-8.5 363.93,-15.5"/>
 </g>
-<!-- interface~mus_calc_thermfactor~2 -->
+<!-- interface~mus_calc_thermfactor -->
 <g id="interface~~calc_therm_factor_loc~~CalledByGraph_node3" class="node">
-<title>interface~mus_calc_thermfactor~2</title>
-<g id="a_interface~~calc_therm_factor_loc~~CalledByGraph_node3"><a xlink:href="../interface/mus_calc_thermfactor~2.html" xlink:title="mus_calc_thermFactor">
+<title>interface~mus_calc_thermfactor</title>
+<g id="a_interface~~calc_therm_factor_loc~~CalledByGraph_node3"><a xlink:href="../interface/mus_calc_thermfactor.html" xlink:title="mus_calc_thermFactor">
 <polygon fill="#a7506f" stroke="#a7506f" points="133,-24 0,-24 0,0 133,0 133,-24"/>
 <text text-anchor="middle" x="66.5" y="-9.6" font-family="Helvetica,sans-Serif" font-size="10.50" fill="white">mus_calc_thermFactor</text>
 </a>
 </g>
 </g>
-<!-- interface~mus_calc_thermfactor~2&#45;&gt;proc~mus_calc_thermfactor_single~2 -->
+<!-- interface~mus_calc_thermfactor&#45;&gt;proc~mus_calc_thermfactor_single -->
 <g id="interface~~calc_therm_factor_loc~~CalledByGraph_edge2" class="edge">
-<title>interface~mus_calc_thermfactor~2&#45;&gt;proc~mus_calc_thermfactor_single~2</title>
+<title>interface~mus_calc_thermfactor&#45;&gt;proc~mus_calc_thermfactor_single</title>
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@@ -392,7 +392,7 @@ <h3>Arguments</h3>
             <p class="text-end">
               Documentation generated by
               <a href="https://github.com/Fortran-FOSS-Programmers/ford">FORD</a>
- on 2024-11-11T19:33:14.564359             </p>
+ on 2024-11-12T12:18:32.156878+0000             </p>
           </div>
         </div>
         <br>

diff --git a/interface/computation.html b/interface/computation.html
@@ -159,7 +159,7 @@ <h3>Arguments</h3>
     <tbody>
         <tr>
             <td>
-              <span class="anchor" id="variable-me~63"></span>
+              <span class="anchor" id="variable-me~24"></span>
               class(<a href='../type/mus_control_type.html'>mus_control_type</a>)
             </td>
 <td></td>
@@ -174,7 +174,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-scheme~16"></span>
+              <span class="anchor" id="variable-scheme~8"></span>
               type(<a href='../type/mus_scheme_type.html'>mus_scheme_type</a>),
             </td>
 <td>intent(inout)</td>
@@ -189,7 +189,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-geometry~9"></span>
+              <span class="anchor" id="variable-geometry~8"></span>
               type(<a href='../type/mus_geom_type.html'>mus_geom_type</a>),
             </td>
 <td>intent(inout)</td>
@@ -204,7 +204,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-params~12"></span>
+              <span class="anchor" id="variable-params~8"></span>
               type(<a href='../type/mus_param_type.html'>mus_param_type</a>),
             </td>
 <td>intent(inout)</td>
@@ -219,7 +219,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-ilevel~53"></span>
+              <span class="anchor" id="variable-ilevel~30"></span>
               integer,
             </td>
 <td>intent(in)</td>
@@ -258,7 +258,7 @@ <h3>Description</h3>
             <p class="text-end">
               Documentation generated by
               <a href="https://github.com/Fortran-FOSS-Programmers/ford">FORD</a>
- on 2024-11-11T19:33:14.564359             </p>
+ on 2024-11-12T12:18:32.156878+0000             </p>
           </div>
         </div>
         <br>

diff --git a/interface/derive_auxfromstate.html b/interface/derive_auxfromstate.html
@@ -159,7 +159,7 @@ <h3>Arguments</h3>
     <tbody>
         <tr>
             <td>
-              <span class="anchor" id="variable-dervarpos~25"></span>
+              <span class="anchor" id="variable-dervarpos~3"></span>
               class(<a href='../type/mus_dervarpos_type.html'>mus_derVarPos_type</a>),
             </td>
 <td>intent(in)</td>
@@ -174,7 +174,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-state~16"></span>
+              <span class="anchor" id="variable-state~6"></span>
               real(kind=rk),
             </td>
 <td>intent(in)</td>
@@ -191,7 +191,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-neigh~16"></span>
+              <span class="anchor" id="variable-neigh~6"></span>
               integer,
             </td>
 <td>intent(in)</td>
@@ -206,7 +206,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-ifield~39"></span>
+              <span class="anchor" id="variable-ifield~5"></span>
               integer,
             </td>
 <td>intent(in)</td>
@@ -221,7 +221,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-nelems~37"></span>
+              <span class="anchor" id="variable-nelems~7"></span>
               integer,
             </td>
 <td>intent(in)</td>
@@ -236,7 +236,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-nsize~15"></span>
+              <span class="anchor" id="variable-nsize~7"></span>
               integer,
             </td>
 <td>intent(in)</td>
@@ -251,7 +251,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-ilevel~73"></span>
+              <span class="anchor" id="variable-ilevel~7"></span>
               integer,
             </td>
 <td>intent(in)</td>
@@ -266,7 +266,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-stencil~19"></span>
+              <span class="anchor" id="variable-stencil"></span>
               type(<a href='https://apes-suite.github.io/treelm/type/tem_stencilheader_type.html'>tem_stencilHeader_type</a>),
             </td>
 <td>intent(in)</td>
@@ -281,7 +281,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-varsys~50"></span>
+              <span class="anchor" id="variable-varsys~6"></span>
               type(<a href='https://apes-suite.github.io/treelm/type/tem_varsys_type.html'>tem_varSys_type</a>),
             </td>
 <td>intent(in)</td>
@@ -297,7 +297,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-auxfield~25"></span>
+              <span class="anchor" id="variable-auxfield~6"></span>
               real(kind=rk),
             </td>
 <td>intent(inout)</td>
@@ -315,7 +315,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-quantities~5"></span>
+              <span class="anchor" id="variable-quantities"></span>
               type(<a href='../type/mus_scheme_derived_quantities_type.html'>mus_scheme_derived_quantities_type</a>),
             </td>
 <td>intent(in)</td>
@@ -354,7 +354,7 @@ <h3>Description</h3>
             <p class="text-end">
               Documentation generated by
               <a href="https://github.com/Fortran-FOSS-Programmers/ford">FORD</a>
- on 2024-11-11T19:33:14.564359             </p>
+ on 2024-11-12T12:18:32.156878+0000             </p>
           </div>
         </div>
         <br>

diff --git a/interface/derive_auxfromstatefunc.html b/interface/derive_auxfromstatefunc.html
@@ -159,7 +159,7 @@ <h3>Arguments</h3>
     <tbody>
         <tr>
             <td>
-              <span class="anchor" id="variable-dervarpos~27"></span>
+              <span class="anchor" id="variable-dervarpos~5"></span>
               class(<a href='../type/mus_dervarpos_type.html'>mus_derVarPos_type</a>),
             </td>
 <td>intent(in)</td>
@@ -174,7 +174,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-state~17"></span>
+              <span class="anchor" id="variable-state~7"></span>
               real(kind=rk),
             </td>
 <td>intent(in)</td>
@@ -190,7 +190,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-ifield~41"></span>
+              <span class="anchor" id="variable-ifield~7"></span>
               integer,
             </td>
 <td>intent(in)</td>
@@ -205,7 +205,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-stencil~20"></span>
+              <span class="anchor" id="variable-stencil~2"></span>
               type(<a href='https://apes-suite.github.io/treelm/type/tem_stencilheader_type.html'>tem_stencilHeader_type</a>),
             </td>
 <td>intent(in)</td>
@@ -220,7 +220,7 @@ <h3>Arguments</h3>
         </tr>
         <tr>
             <td>
-              <span class="anchor" id="variable-varsys~52"></span>
+              <span class="anchor" id="variable-varsys~8"></span>
               type(<a href='https://apes-suite.github.io/treelm/type/tem_varsys_type.html'>tem_varSys_type</a>),
             </td>
 <td>intent(in)</td>
@@ -237,7 +237,7 @@ <h3>Arguments</h3>
     </tbody>
   </table>
 
-      <h3>Return Value <span class="anchor" id="variable-res~12"></span><small>real(kind=rk)(varSys%nAuxScalars)</small></h3>
+      <h3>Return Value <span class="anchor" id="variable-res~6"></span><small>real(kind=rk)(varSys%nAuxScalars)</small></h3>
     <p>Output of this routine
 Size: nAuxScalars</p>
     <h3>Description</h3>
@@ -262,7 +262,7 @@ <h3>Description</h3>
             <p class="text-end">
               Documentation generated by
               <a href="https://github.com/Fortran-FOSS-Programmers/ford">FORD</a>
- on 2024-11-11T19:33:14.564359             </p>
+ on 2024-11-12T12:18:32.156878+0000             </p>
           </div>
         </div>
         <br>