v0.13.1

Changelog

Added

• eds.tables accepts a minimum_table_size (default 2) argument to reduce pollution
• RuleBasedQualifier now expose a process method that only returns qualified entities and token without actually tagging them, deferring this task to the __call__ method.
• Added new patterns for metastasis detection developed on CT-Scan reports.
• Added citation of articles

Fixed

• Disorder and Behavior pipes don't use a "PRESENT" or "ABSENT" status anymore. Instead, status=None by default,
  and ent._.negation is set to True instead of setting status to "ABSENT". To this end, the tobacco and alcohol
  now use the NegationQualifier internally.
• Numbers are now only detected without trying to remove the pollution in between digits, ie 55 @ 77777 could be detected as a full number before, but not anymore.
• Fix fsspec open file encoding to "utf-8".

Changed

• Rename eds.measurements to eds.quantities
• scikit-learn (used in eds.endlines) is no longer installed by default when installing edsnlp[ml]

Pull Requests

• Remove pollution exclusion during numbers matching by @percevalw in #316
• Rename eds.measurements by @svittoz in #313
• Adding minimum_table_size argument to eds.tables by @svittoz in #318
• Fs encoding fix by @Aremaki in #320
• chore(deps): bump actions/download-artifact from 2 to 4.1.7 in /.github/workflows in the github_actions group across 1 directory by @dependabot in #319
• fix: skip spacy 3.8.0 due to numpy build dep by @percevalw in #321
• Fix behavior, disorder and qualifier pipes by @Thomzoy in #322
• Metastatic status by @aricohen93 in #308
• chore: bump version to 0.13.1 by @percevalw in #327
• Test 3.12 by @percevalw in #328

New Contributors

• @dependabot made their first contribution in #319

Full Changelog: v0.13.0...v0.13.1