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Improve BLAT filter, require pysam 0.7.5
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@aradenbaugh aradenbaugh released this 15 Oct 17:51
· 286 commits to master since this release
v1.1.1
280054e
  • Require pysam version 0.7.5 to stick with code using qpos
  • Changed BLAT filter to use both the e-value and the identity scores. A read is valid if it has the highest of either of the scores.
  • Changed mpileup filter to re-classify germline mutations without a high enough alternative allele percentage as possibly somatic.
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