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Upgrade to pysam 0.8.1 or higher, specify pileups instead of bams
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@aradenbaugh aradenbaugh released this 15 Oct 17:48
· 283 commits to master since this release
v1.1.2
aff4bd0
  • Require pysam version 0.8.1 or higher to deal with API inconsistencies
  • filterByReadSupport.py uses query_position instead of qpos to deal with pysam API inconsistencies
  • Added ability to specify pileups as input instead of bams
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