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Update to use OpenMC v0.14.0, update documentation #19

Merged
merged 83 commits into from
Jun 13, 2024
Merged

Update to use OpenMC v0.14.0, update documentation #19

merged 83 commits into from
Jun 13, 2024

Commits on Jun 19, 2023

  1. update tests and streamline depletion functions

    @abachma2
    abachma2 committed Jun 19, 2023
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  2. update reading materials function from Depletion class

    @abachma2
    abachma2 committed Jun 19, 2023
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Commits on Jun 20, 2023

  1. add depletion results for testing suite

    @abachma2
    abachma2 committed Jun 20, 2023
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  2. update comp to h5 committed to repo

    @abachma2
    abachma2 committed Jun 20, 2023
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Commits on Oct 10, 2023

  1. add unit test file

    @ceserz2
    ceserz2 committed Oct 10, 2023
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  2. comment out integration test 

    commented out to prevent running test that is known to fail
    @ceserz2
    ceserz2 committed Oct 10, 2023
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Commits on Oct 24, 2023

  1. adding the rest of the steps to build the environment

    @ceserz2
    ceserz2 committed Oct 24, 2023
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  2. adding "run tests" step

    @ceserz2
    ceserz2 committed Oct 24, 2023
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Commits on Oct 28, 2023

  1. adding "install numpy" step

    @ceserz2
    ceserz2 committed Oct 28, 2023
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  2. adding "install mamba from conda" step

    @ceserz2
    ceserz2 committed Oct 28, 2023
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  3. adding a new install command for mamba

    @ceserz2
    ceserz2 committed Oct 28, 2023
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  4. updating conda install for mamba

    @ceserz2
    ceserz2 committed Oct 28, 2023
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Commits on Nov 7, 2023

  1. adding "checking environment step"

    @ceserz2
    ceserz2 committed Nov 7, 2023
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  2. commenting out "install mamba from conda" step

    @ceserz2
    ceserz2 committed Nov 7, 2023
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  3. adding "conda info" step

    @ceserz2
    ceserz2 committed Nov 7, 2023
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Commits on Nov 8, 2023

  1. adding "conda info" to steps

    @ceserz2
    ceserz2 committed Nov 8, 2023
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  2. fixing "conda info" steps

    @ceserz2
    ceserz2 committed Nov 8, 2023
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  3. updating environment setup

    @ceserz2
    ceserz2 committed Nov 8, 2023
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  4. fixing more errors with environment activation

    @ceserz2
    ceserz2 committed Nov 8, 2023
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  5. removing environment activation step

    @ceserz2
    ceserz2 committed Nov 8, 2023
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Commits on Nov 9, 2023

  1. fixing errors in setting up environment

    @ceserz2
    ceserz2 committed Nov 9, 2023
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Commits on Nov 10, 2023

  1. updating environment command added

    @ceserz2
    ceserz2 committed Nov 10, 2023
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Commits on Nov 11, 2023

  1. fixing "activate environment" function for each step

    @ceserz2
    ceserz2 committed Nov 11, 2023
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  2. more fixes on code

    @ceserz2
    ceserz2 committed Nov 11, 2023
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  3. inserting "conda init" command to initialize shell

    @ceserz2
    ceserz2 committed Nov 11, 2023
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  4. fixing command to activate the environment

    @ceserz2
    ceserz2 committed Nov 11, 2023
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  5. trying a new method for environment activation

    @ceserz2
    ceserz2 committed Nov 11, 2023
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Commits on Nov 17, 2023

  1. trying to update code to fix CI file

    @ceserz2
    ceserz2 committed Nov 17, 2023
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Commits on Apr 2, 2024

  1. Merge branch 'ci' of github.com:ceserz2/openmcyclus_cz into tests

    @abachma2
    abachma2 committed Apr 2, 2024
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  2. add gitignore file

    @abachma2
    abachma2 committed Apr 2, 2024
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  3. add CHANGELOG for repo

    @abachma2
    abachma2 committed Apr 2, 2024
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  4. add contributing guide

    @abachma2
    abachma2 committed Apr 2, 2024
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  5. run on PR only while making updates

    @abachma2
    abachma2 committed Apr 2, 2024
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  6. adjsut list formatting

    @abachma2
    abachma2 committed Apr 2, 2024
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  7. adjsut formatting more

    @abachma2
    abachma2 committed Apr 2, 2024
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  8. add CONTRIBUTING to changelog

    @abachma2
    abachma2 committed Apr 2, 2024
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  9. update dependency versions and some text

    @abachma2
    abachma2 committed Apr 2, 2024
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  10. actually only run on PR not push

    @abachma2
    abachma2 committed Apr 2, 2024
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  11. fix syntax to run on PR

    @abachma2
    abachma2 committed Apr 2, 2024
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  12. convert to rst, and change formatting 

    All of the other documentation files are in rst, so this change is for
consistency
    @abachma2
    abachma2 committed Apr 2, 2024
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  13. correct cyclus website link

    @abachma2
    abachma2 committed Apr 2, 2024
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  14. fix formatting

    @abachma2
    abachma2 committed Apr 2, 2024
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  15. fix the rest of the format errors

    @abachma2
    abachma2 committed Apr 2, 2024
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Commits on Apr 3, 2024

  1. Merge branch 'tests' into updates

    @abachma2
    abachma2 committed Apr 3, 2024
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  2. set to run only on PR while actively working on updates

    @abachma2
    abachma2 committed Apr 3, 2024
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  3. add note about deps on conda, may be used for install, unsure yet

    @abachma2
    abachma2 committed Apr 3, 2024
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  4. start update for OpenMC 0.14.0

    @abachma2
    abachma2 committed Apr 3, 2024
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  5. remove file, no longer needed for testing

    @abachma2
    abachma2 committed Apr 3, 2024
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  6. remove file, not needed for testing

    @abachma2
    abachma2 committed Apr 3, 2024
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Commits on Apr 4, 2024

  1. add python script of OpenMC model for debugging

    @abachma2
    abachma2 committed Apr 4, 2024
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Commits on Apr 9, 2024

  1. finish updating models to OpenMC 0.14.0

    @abachma2
    abachma2 committed Apr 9, 2024
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  2. get mox model spent comp printed

    @abachma2
    abachma2 committed Apr 9, 2024
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  3. add flux parameter, refactor getting spent comps

    @abachma2
    abachma2 committed Apr 9, 2024
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  4. add test for run_depletion, update formats for others

    @abachma2
    abachma2 committed Apr 9, 2024
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  5. add scipy dep, modify description of openmc needs

    @abachma2
    abachma2 committed Apr 9, 2024
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  6. change to run on push

    @abachma2
    abachma2 committed Apr 9, 2024
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Commits on Apr 10, 2024

  1. remove duplicate steps, add scipy version

    @abachma2
    abachma2 committed Apr 10, 2024
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  2. correct format, add more file types

    @abachma2
    abachma2 committed Apr 10, 2024
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  3. clean up unused steps

    @abachma2
    abachma2 committed Apr 10, 2024
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  4. add missing files for comparison, deplete unused file

    @abachma2
    abachma2 committed Apr 10, 2024
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Commits on Apr 15, 2024

  1. add thermal power input parameter

    @abachma2
    abachma2 authored Apr 15, 2024
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  2. add flux parameter, update transmute

    @abachma2
    abachma2 authored Apr 15, 2024
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Commits on Apr 18, 2024

  1. remove coversion factor parameter

    abachmann committed Apr 18, 2024
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Commits on Apr 19, 2024

  1. remove instantializing self.micro_xs 

    The od.MicroXS() requires some arguments in v0.14.0 to
instantialize the object. Therefore, this line was removed,
because with it in place the simulation would segfault
before running anything.
    @abachma2
    abachma2 committed Apr 19, 2024
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Commits on Apr 23, 2024

  1. return transmute to using OpenMC, remove check_existing_recipes

    @abachma2
    abachma2 committed Apr 23, 2024
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  2. add new params, change spent uox to pu

    @abachma2
    abachma2 committed Apr 23, 2024
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  3. remove Cycamore Reactor in lib specs

    @abachma2
    abachma2 committed Apr 23, 2024
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  4. add new parameters

    @abachma2
    abachma2 committed Apr 23, 2024
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  5. update CHANGELOG

    @abachma2
    abachma2 committed Apr 23, 2024
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  6. pep8 fixes

    @abachma2
    abachma2 committed Apr 23, 2024
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  7. add new params, update install instructions

    @abachma2
    abachma2 committed Apr 23, 2024
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  8. correct code block format

    @abachma2
    abachma2 committed Apr 23, 2024
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  9. update deps install and code format for input

    @abachma2
    abachma2 committed Apr 23, 2024
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Commits on Apr 25, 2024

  1. make some of the suggestions from @yardasol

    @abachma2
    abachma2 committed Apr 25, 2024
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  2. initialize microxs and materials with class 

    Initializing these objects with the class removes extra calls to
the files, and removes the need for the methods to create the
objects. Still need to test out with Cyclus integration, but
unit tests pass
    @abachma2
    abachma2 committed Apr 25, 2024
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Commits on May 6, 2024

  1. change material and microxs initialization 

    These objects are already initialized in the enter_notify method
of the DepleteReactor, and initializing them in the Depletion
class doesn't work when running the archetype. This method
requires more Depletion class method inputs, but it all
runs
    @abachma2
    abachma2 committed May 6, 2024
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  2. pep8 fixes, update documentation

    @abachma2
    abachma2 committed May 6, 2024
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  3. pep8 fixes

    @abachma2
    abachma2 committed May 6, 2024
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Commits on May 20, 2024

  1. change cyclus/cycamore install instructions 

    THe new version of these codes (v1.6) is now live in
conda, and it'll be easier to install them using this method.
    @abachma2
    abachma2 committed May 20, 2024
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Commits on May 30, 2024

  1. address comments from @yardasol

    @abachma2
    abachma2 committed May 30, 2024
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  2. fix test suite, function inputs and locations

    @abachma2
    abachma2 committed May 30, 2024
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  3. update OpenMC footnote

    @abachma2
    abachma2 committed May 30, 2024
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Commits on Jun 5, 2024

  1. address docstring comments from @yardasol

    @abachma2
    abachma2 committed Jun 5, 2024
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