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Fix for #219 - Bad python2 file lost in the bin folder #224

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Fix for #219 - Bad python2 file lost in the bin folder #224

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Commits on Jun 18, 2019

  1. Merge pull request #207 from assemblerflow/dev 

    Update to version 1.4.2
    @ODiogoSilva
    ODiogoSilva authored Jun 18, 2019
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Commits on Jul 30, 2019

  1. Create CODE_OF_CONDUCT.md (#214)

    @tiagofilipe12
    tiagofilipe12 authored Jul 30, 2019
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Commits on Jul 31, 2019

  1. Added gitter badge

    @tiagofilipe12
    tiagofilipe12 authored Jul 31, 2019
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Commits on Sep 9, 2019

  1. move renamePE_samtoolsFASTQ.py from bin. adjust retrieved_mapped and … 

    …remove_host processes.
    @cimendes
    cimendes committed Sep 9, 2019
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  2. add missing status channel to remove_host

    @cimendes
    cimendes committed Sep 9, 2019
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Commits on Sep 16, 2019

  1. update with changes in dev (#223) 

    * Dag files (#209)

* move DAG JSON files to the resources directory

* added manifest information to the `nextflow.config` file to allow for remote execution (#204) - Partial solve to #194 issue
- Deprecation of the `manifest.config´ file

* Set phred encoding when it fails to be determined - trimmomatic (#211)

* fix bug publishdir (downsample_fastq component)

* add pphred33 when encoding fails to be determined, if still fails retry with phred64 encoding (trimmomatic component)

* Fix downsample (#222)

* edited file names for downsample fastqs
* stringified depth for file name
    @cimendes
    cimendes authored Sep 16, 2019
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  2. update changelog and fix bug on remove_host component

    @cimendes
    cimendes committed Sep 16, 2019
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  3. fixed a bunch of bugs in "renamePE" processes and template

    @cimendes
    cimendes committed Sep 16, 2019
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  4. fix issues with bugs in "renamePE" process in the "retrieve_mapped" 

    component
    @cimendes
    cimendes committed Sep 16, 2019
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  5. Merge branch 'dev' into fix_219

    @cimendes
    cimendes authored Sep 16, 2019
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