Allow find_peaks border_width to be different along x and y #1042
Workflow file for this run
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| name: Weekly Cron Tests | |
| on: | |
| schedule: | |
| # run every Monday at 5am UTC | |
| - cron: '0 5 * * 1' | |
| pull_request: | |
| # We also want this workflow triggered if the 'Weekly CI' label is added | |
| # or present when PR is updated | |
| types: | |
| - synchronize | |
| - labeled | |
| push: | |
| tags: | |
| - '*' | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| TOXARGS: '-v' | |
| IS_CRON: 'true' | |
| permissions: | |
| contents: read | |
| jobs: | |
| tests: | |
| if: (github.repository == 'astropy/photutils' && (github.event_name == 'schedule' || github.event_name == 'push' || github.event_name == 'workflow_dispatch' || contains(github.event.pull_request.labels.*.name, 'Weekly CI'))) | |
| name: ${{ matrix.os }}, ${{ matrix.tox_env }} | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: ${{ matrix.allow_failure }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| python: '3.12' | |
| tox_env: 'py312-test-alldeps-devinfra' | |
| allow_failure: false | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python }} | |
| uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install base dependencies | |
| run: python -m pip install --upgrade pip setuptools tox | |
| - name: Print Python, pip, setuptools, and tox versions | |
| run: | | |
| python -c "import sys; print(f'Python {sys.version}')" | |
| python -c "import pip; print(f'pip {pip.__version__}')" | |
| python -c "import setuptools; print(f'setuptools {setuptools.__version__}')" | |
| python -c "import tox; print(f'tox {tox.__version__}')" | |
| - name: Run tests | |
| run: tox -e ${{ matrix.tox_env }} -- ${{ matrix.toxposargs }} | |
| test_more_architectures: | |
| # The following architectures are emulated and are therefore slow, so | |
| # we include them just in the weekly cron. These also serve as a test | |
| # of using system libraries and using pytest directly. | |
| runs-on: ubuntu-20.04 | |
| name: More architectures | |
| if: (github.repository == 'astropy/photutils' && (github.event_name == 'schedule' || github.event_name == 'push' || github.event_name == 'workflow_dispatch' || contains(github.event.pull_request.labels.*.name, 'Arch CI'))) | |
| env: | |
| ARCH_ON_CI: ${{ matrix.arch }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - arch: s390x | |
| - arch: ppc64le | |
| - arch: armv7 | |
| steps: | |
| - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
| with: | |
| fetch-depth: 0 | |
| - uses: uraimo/run-on-arch-action@5397f9e30a9b62422f302092631c99ae1effcd9e # v2.8.1 | |
| name: Run tests | |
| id: build | |
| with: | |
| arch: ${{ matrix.arch }} | |
| distro: ubuntu_rolling | |
| shell: /bin/bash | |
| env: | | |
| ARCH_ON_CI: ${{ env.ARCH_ON_CI }} | |
| IS_CRON: ${{ env.IS_CRON }} | |
| install: | | |
| apt-get update -q -y | |
| apt-get install -q -y --no-install-recommends \ | |
| git \ | |
| g++ \ | |
| pkg-config \ | |
| python3 \ | |
| python3-astropy \ | |
| python3-erfa \ | |
| python3-extension-helpers \ | |
| python3-numpy \ | |
| python3-pytest-astropy \ | |
| python3-setuptools-scm \ | |
| python3-scipy \ | |
| python3-skimage \ | |
| python3-sklearn \ | |
| python3-venv \ | |
| python3-wheel \ | |
| wcslib-dev | |
| run: | | |
| uname -a | |
| echo "LONG_BIT="$(getconf LONG_BIT) | |
| python3 -m venv --system-site-packages tests | |
| source tests/bin/activate | |
| # cython and pyerfa versions in ubuntu repos are too old currently | |
| pip install -U cython | |
| pip install -U --no-build-isolation pyerfa | |
| ASTROPY_USE_SYSTEM_ALL=1 pip3 install -v --no-build-isolation -e .[test] | |
| pip3 list | |
| python3 -m pytest | |
| test_arm64: | |
| # Native arm64 testing -- paid test runner | |
| # keep this in the weekly cron to minimize the number of jobs | |
| runs-on: linux-arm64 | |
| name: Python 3.12 (arm64) | |
| # keep condition in sync with test_more_architectures | |
| if: (github.repository == 'astropy/photutils' && (github.event_name == 'schedule' || github.event_name == 'push' || github.event_name == 'workflow_dispatch' || contains(github.event.pull_request.labels.*.name, 'Arch CI'))) | |
| steps: | |
| - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0 | |
| with: | |
| python-version: '3.12' | |
| - name: Set up dependencies | |
| run: pip install tox | |
| - name: Run tests | |
| run: tox -e py312-test -- -n=2 |