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Image data handling refactor#228

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Commits on Sep 18, 2024

• fix input for background.traces, raise error in FlatTrace for negative trace

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• rtd fixes

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Commits on Nov 3, 2024

• Changed _ImageParser._mask_and_nonfinite_data_handling into a static method and modified the method's logic accordingly.

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• Fixed a minor typo in mask_treatment docstring.

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• Added a mask treatment method as an optional argument to _ImageParser._parse_image.

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• Updated image parsing method in BoxcarExtract.

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• Fixed too long lines.

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Commits on Nov 4, 2024

• Updated _InmageParser._parse_image method call to include disp_axis and mask_treatment.

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• Added a small comment to '_ImageParser' about 'implemented_mask_treatment_methods'.

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• Updated _InmageParser._parse_image method call to include disp_axis and mask_treatment.

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• Changed 'TestMaskTracing.test_array_trace_masking' to use 'pytest.warns' instead of 'pytest.raises' to test for an expected warning.

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Commits on Nov 11, 2024

• MNT: Use hash for Action workflow versions and update if needed

  

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• Create dependabot.yml

  

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• Created a 'specreduce.image.Image' class that can replace the 'specreduce.core._ImageParser' mixin class.

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• Added some sanity checks to the Image class.

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• Renamed Image class to SRImage and enhanced axis handling.

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• Renamed some SRImage properties.

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• Refactored SRImage initialization and axis handling.

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• Added the first SRImage tests.

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• Refactored Background class to use SRImage for image handling

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• Refactored the Tracing classes to use the SRImage class instead of _ImageParser.

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• Added size_disp_axis and size_crossdisp_axis properties to the SRImage class to simplify dimension handling. Refactored trace calculations in tracing.py to utilize these new properties.

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• Finalising the image handling refactoring for the Trace and Extract classes.

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• Improved the 'SRImage' class uncertainty handling.

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• Refactored the image handling logic to further use the SRImage class, replacing the _ImageParser. Updated related tests and modules to accommodate SRImage-specific methods and streamlined code a bit.

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