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Sync main from soda-core #9
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[pre-commit.ci] pre-commit autoupdate (sodadata#1935)
updates: - [github.com/psf/black: 23.7.0 → 23.9.1](psf/black@23.7.0...23.9.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Vijay Kiran <[email protected]>
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Feature/add more file formats for duckdb (sodadata#1942)
* Initial commit with csv tests * Added Json tests * Added support for csv, json and parquet file for duckdb. Changes to be committed: modified: soda/duckdb/soda/data_sources/duckdb_data_source.py modified: soda/duckdb/tests/test_duckdb.py * Removing unused import Changes to be committed: modified: soda/duckdb/tests/test_duckdb.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update soda/duckdb/tests/test_duckdb.py Removed unused f-string Co-authored-by: Milan Lukac <[email protected]> * Update soda/duckdb/tests/test_duckdb.py Removed unused f-string Co-authored-by: Milan Lukac <[email protected]> * Update soda/duckdb/tests/test_duckdb.py Removed unused f-string Co-authored-by: Milan Lukac <[email protected]> --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Milan Lukac <[email protected]>
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added BigQuery Job Labels (sodadata#1947)
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Distribution: compute value counts in DB rather than in python
* fix: compute value counts in DB rather than in python for categoric distribution checks (#116) * get value counts from db for categoric variables * add/modify unit tests for distro checks * fix unit tests * fix sqlserver limit query * fix db specific unit tests for distro check * fix unit tests and change pr feedback * do not evaluate the check if there are more than 1M groups * fix sqlserver * remove sampling from categoric variables for distro checks * add query logs for distro check * use logs.debug to show the running query in verbose mode rather than using logs.info * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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feat: Add Dask/Pandas configurable data source naming support (sodada…
…ta#1951) * feat: Add Dask/Pandas data source naming support * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add missing method * fix indent * Fix test * remove unused feature test * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add SparkDF support * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Freshness: support mixed thresholds (sodadata#1957)
* Freshness: support mixed thresholds * fix precommit
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remove % from pattern (sodadata#1956)
Co-authored-by: Milan Lukac <[email protected]>
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Commits on Nov 14, 2023
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Sqlserver: support quoting tables with brackets, "quote_tables" mode (s…
…odadata#1959) * Sqlserver: support quoting tables with whitespace * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Support [] as quotes * Fix parser * Use upper case info schema * Remove default casify sql function * Update quoting * Fix quoting * Strip quotes from all payloads using table name * Change how bracket quotes work * Remove schema identifier lowercasing * Fix parser --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Commits on Nov 15, 2023
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* Initial contracts transformation proposal * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added schema check capability matching columns * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fixing the schema mismatching columns test * Improved test suite and initial docs * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added contract docs and missing check configurations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Added reference property to contracts * Added extra comment in programmatic docs and added test to ignore other keys * added setup.py * Preparations for contracts release * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated contracts package version to 3.0.54 * Fix imports * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix CI * Fix CI --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Milan Lukac <[email protected]>
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Commits on Nov 16, 2023
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fix anomaly detection frequency aggregation bug (sodadata#1975)
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upgrade pydantic from v1 to v2 (sodadata#1974)
* upgrade pydantic from v1 to v2 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Milan Lukac <[email protected]>
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[pre-commit.ci] pre-commit autoupdate (sodadata#1938)
updates: - [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0) - [github.com/asottile/pyupgrade: v3.10.1 → v3.15.0](asottile/pyupgrade@v3.10.1...v3.15.0) - [github.com/PyCQA/isort: 5.12.0 → 5.13.1](PyCQA/isort@5.12.0...5.13.1) - [github.com/psf/black: 23.9.1 → 23.11.0](psf/black@23.9.1...23.11.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Commits on Dec 27, 2023
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feat: implement warn_only for anomaly score (sodadata#156) (sodadata#…
…1980) * feat: implement warn_only for anomaly score (sodadata#156) * implement warn_only for anomaly score * fix unit tests * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Document group by example for Soda Core with failed rows check (sodad…
…ata#1984) * Added group by example for Soda Core with failed rows check * Adjusted SQL per suggestion * Corrected SQL
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bug: handle null values for continuous dist (sodadata#165) (sodadata#…
…1994) * bug: handle null values for continuous dist (sodadata#165) * handle null values for ks test * remove null values from test data * add unit tests for partially null columns * fix unit tests for empty test set * raise warning if we remove null values * refac warning string * add unit tests for null values in dro generation * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * add future annotations --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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[pre-commit.ci] pre-commit autoupdate (sodadata#1977)
updates: - [github.com/PyCQA/isort: 5.13.1 → 5.13.2](PyCQA/isort@5.13.1...5.13.2) - [github.com/psf/black: 23.11.0 → 23.12.1](psf/black@23.11.0...23.12.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Milan Lukac <[email protected]>
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feat: implement new anomaly detection in soda core (sodadata#1995)
* Merge branch 'main' of https://github.com/sodadata/soda-core * run antlr parser for core * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix conflicts and fix python3.8 issues * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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feat: support built-in prophet public holidays (sodadata#1997)
support built-in prophet public holidays - cherry-picked from library
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Hive data source improvements (sodadata#1982)
* feat: Increase PyHive Log Level to ERROR * fix: DESCRIBE without TABLE qualifier as it does not exists in Hive and works in Spark without it * feat: Add kerberos service property to allow kerberized hive connection --------- Co-authored-by: Milan Lukac <[email protected]>
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Commits on Jan 25, 2024
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feat: implement migrate from anomaly score check config (#168) (sodad…
…ata#1998) * Implement migrate from anomaly score check config * rename migrate_anomaly_score to take_over_old_check * rename config to take_over_existing_anomaly_score_check
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feat: implement severity level paramaters (sodadata#2001)
* cherry-pick from library
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fix: anomaly detection feedbacks (sodadata#2005)
* fix dogfooding feedbacks (#175) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * trigger CI --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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[pre-commit.ci] pre-commit autoupdate (sodadata#2002)
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feat: anomaly detection simulator (#163) (sodadata#2010)
* feat: anomaly detection simulator (#163)
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feat: added dremio token support (sodadata#2009)
Co-authored-by: Milan Lukac <[email protected]>
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feat: correctly identified anomalies are excluded from training data (s…
…odadata#2013) * feat: correctly identified anomalies are excluded from training data (sodadata#178) * correctly identified anomalies are excluded from training data * fix in case skipMeasurements does not exist * fix unit tests * Fix Bastiens feedback * remove a misleading comment * use isCorrectlyClassified instead of isAnomaly field * rename is_anomaly fields to increase the readibility * fix formatting * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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fix: show more clearly the detected frequency using warning message f…
…irst (sodadata#2014) * fix: show more clearly the detected frequency using warning message first (sodadata#180) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Fix simulator import and streamlit path (sodadata#2017)
* Fix simulator streamlit path * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix simulator streamlit path --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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[pre-commit.ci] pre-commit autoupdate (sodadata#2016)
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Update oracle_data_source.py (sodadata#2012)
* Update oracle_data_source.py Accommodate the Oracle data source to connect with `host`, `port` and `service_name` passed to it as different properties in the soda config file. We can still pass `connectstring` property. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update oracle_data_source.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * this commit solves sodadata#1990 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Milan Lukac <[email protected]>
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feat: in anomaly detection simulator use soda core historic check res…
…ults endpoint instead of test results (sodadata#2025) * fix timezone issue and log messages (#188) * feat: in anomaly detection simulator use soda core historic check results endpoint instead of test results (#190) * Fix integer detection * Use sodaCoreCheckIdentities endpoint to get check ids for simulator
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Update dask-sql (sodadata#2026)
* Unpin dask-sql * Unpin dask-sql * Fix custom functions
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feat: implement daily and monthly seasonality to external regressor … (…
…sodadata#2027) * IA 533 implement daily and monthly seasonality to external regressor (#189) * implement weekly montly yearly seasonality for ext regressor * Implement custom external regressor for monthly and yearly * Fix integer detection * Use sodaCoreCheckIdentities endpoint to get check ids for simulator * refactor external regressor and add monthly and yearly feedbacks * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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[pre-commit.ci] pre-commit autoupdate (sodadata#2022)
updates: - [github.com/asottile/pyupgrade: v3.15.0 → v3.15.1](asottile/pyupgrade@v3.15.0...v3.15.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Milan Lukac <[email protected]>
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bugfix: support attributes on multiple checks (sodadata#2032)
* initial commit with regression * possible regression fix * build fix
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Use dbt's new access_url pattern to access cloud API (sodadata#2035)
* use new dbt access url pattern to reach cloud API * add some spaces
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Contracts 2nd iteration (sodadata#2006)
* added contract roadmap ideas * Added column level checks and switched to standard yaml checks * Added contract json schema and started on docs * Contract wip * Contract wip * Contract wip * Contract wip * Contract wip * Contract wip * Contract wip * Contract wip * Contract wip * Contract wip * Contract wip * Contract wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * Update soda/contracts/docs/README.md Co-authored-by: Milan Lukac <[email protected]> * Update soda/contracts/docs/README.md Co-authored-by: Milan Lukac <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * wip * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * wip * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix import path in tests * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * wip * wip * Fix attribute handler timezone test * Fix fixtures imports * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix fixtures imports --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Milan Lukac <[email protected]> Co-authored-by: Milan Lukac <[email protected]>
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Rename argument in set_scan_results_file method (sodadata#2047)
The argument name 'set_scan_results_file' in the set_scan_results_file method was confusing as it shared the same name as the function itself. This commit renames the argument to 'scan_results_file' for improved clarity and consistency. Resolves sodadata#2040
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[pre-commit.ci] pre-commit autoupdate (sodadata#2037)
updates: - [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](pre-commit/pre-commit-hooks@v4.5.0...v4.6.0) - [github.com/asottile/pyupgrade: v3.15.1 → v3.15.2](asottile/pyupgrade@v3.15.1...v3.15.2) - [github.com/psf/black: 24.2.0 → 24.4.0](psf/black@24.2.0...24.4.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Update db2_data_source.py (sodadata#2063)
* Update db2_data_source.py This is needed in order to fix the connectivity issues for db2 from soda-core * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update db2_data_source.py adding security as part of the config for db2, security will be added to the connection string only when it is not empty. This is needed in order to establish a connection with db2 * Update db2_data_source.py remove security from the 1st connection string * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Milan Lukac <[email protected]>
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Contracts v3: * Added spark session support * Made all sql properties consistently end with ..._sql * Introduced warehouse as terminology * Made identity hash instead of long structured name * Added support quoting * Added check level filter_sql support
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* Bump dev requirements * Downgrade docutil for py38 compatibility
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User defined metric fail query (sodadata#2089)
* User defined metric check: support failed rows query * Test file version as well * Fix CI * Make metric check cfg contructor flexy * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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[CLOUD-7400] Improve memory usage (sodadata#2081)
* Improve memory usage * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix broken change * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add pre-commit * Format correctly, add missing log methods * Fix tests * Use correct Query class * Fix pyspark version * dev requirements conflict --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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Bump requests and tox/docker (sodadata#2094)
* Bump requests and tox/docker * Bump requests and tox/docker
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