updated dockerfile

.Rhistory

@@ -1,5 +1,3 @@
-file.path("data-raw", "data.csv"),
-sep = ";",
 dec = ",",
 stringsAsFactors = T
 ) %>%
@@ -510,3 +508,5 @@ rm(list=ls(all.names = TRUE))
 golem::document_and_reload()
 # Run the application
 eDASH::run_app()
+golem::add_dockerfile_with_renv()
+golem::add_dockerfile()

.dockerignore

@@ -0,0 +1,7 @@
+.RData
+.Rhistory
+.git
+.gitignore
+manifest.json
+rsconnect/
+.Rproj.user

Dockerfile

@@ -0,0 +1,53 @@
+FROM rocker/verse:4.2.3
+# Set the used port, once deployed in CrownLabs this variable will be overrided with the value used by CrownLabs
+ENV CROWNLABS_LISTEN_PORT=80
+# Set the web-service basepath, once deployed in CrownLabs this variable will be overrided with the value used by CrownLabs
+ENV CROWNLABS_BASE_PATH=/
+RUN apt-get update && apt-get install -y  cmake libcurl4-openssl-dev libfribidi-dev libharfbuzz-dev libicu-dev libpng-dev libssl-dev libtiff-dev libxml2-dev make pandoc zlib1g-dev && rm -rf /var/lib/apt/lists/*
+RUN mkdir -p /usr/local/lib/R/etc/ /usr/lib/R/etc/
+RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl', Ncpus = 4)" | tee /usr/local/lib/R/etc/Rprofile.site | tee /usr/lib/R/etc/Rprofile.site
+RUN R -e 'install.packages("remotes")'
+RUN Rscript -e 'remotes::install_version("RColorBrewer",upgrade="never", version = "1.1-3")'
+RUN Rscript -e 'remotes::install_version("scales",upgrade="never", version = "1.2.1")'
+RUN Rscript -e 'remotes::install_version("rlang",upgrade="never", version = "1.1.0")'
+RUN Rscript -e 'remotes::install_version("magrittr",upgrade="never", version = "2.0.3")'
+RUN Rscript -e 'remotes::install_version("ggplot2",upgrade="never", version = "3.4.3")'
+RUN Rscript -e 'remotes::install_version("pkgload",upgrade="never", version = "1.3.2.1")'
+RUN Rscript -e 'remotes::install_version("tidyr",upgrade="never", version = "1.3.0")'
+RUN Rscript -e 'remotes::install_version("purrr",upgrade="never", version = "1.0.1")'
+RUN Rscript -e 'remotes::install_version("dplyr",upgrade="never", version = "1.1.1")'
+RUN Rscript -e 'remotes::install_version("knitr",upgrade="never", version = "1.42")'
+RUN Rscript -e 'remotes::install_version("htmltools",upgrade="never", version = "0.5.5")'
+RUN Rscript -e 'remotes::install_version("shiny",upgrade="never", version = "1.7.4")'
+RUN Rscript -e 'remotes::install_version("config",upgrade="never", version = "0.3.2")'
+RUN Rscript -e 'remotes::install_version("shinycssloaders",upgrade="never", version = "1.0.0")'
+RUN Rscript -e 'remotes::install_version("imputeTS",upgrade="never", version = "3.3")'
+RUN Rscript -e 'remotes::install_version("simputation",upgrade="never", version = "0.2.8")'
+RUN Rscript -e 'remotes::install_version("lubridate",upgrade="never", version = "1.9.2")'
+RUN Rscript -e 'remotes::install_version("pkgdown",upgrade="never", version = "2.0.7")'
+RUN Rscript -e 'remotes::install_version("amap",upgrade="never", version = "0.8-19")'
+RUN Rscript -e 'remotes::install_version("shinyjs",upgrade="never", version = "2.1.0")'
+RUN Rscript -e 'remotes::install_version("shinyalert",upgrade="never", version = "3.0.0")'
+RUN Rscript -e 'remotes::install_version("NbClust",upgrade="never", version = "3.0.1")'
+RUN Rscript -e 'remotes::install_version("shinyBS",upgrade="never", version = "0.61.1")'
+RUN Rscript -e 'remotes::install_version("shinyFeedback",upgrade="never", version = "0.4.0")'
+RUN Rscript -e 'remotes::install_version("MLmetrics",upgrade="never", version = "1.1.1")'
+RUN Rscript -e 'remotes::install_version("partykit",upgrade="never", version = "1.2-19")'
+RUN Rscript -e 'remotes::install_version("plyr",upgrade="never", version = "1.8.8")'
+RUN Rscript -e 'remotes::install_version("shinyWidgets",upgrade="never", version = "0.8.0")'
+RUN Rscript -e 'remotes::install_version("shinydashboard",upgrade="never", version = "0.7.2")'
+RUN Rscript -e 'remotes::install_version("DT",upgrade="never", version = "0.30")'
+RUN Rscript -e 'remotes::install_version("golem",upgrade="never", version = "0.4.1")'
+RUN mkdir /build_zone
+ADD . /build_zone
+WORKDIR /build_zone
+RUN R -e 'remotes::install_local(upgrade="never")'
+# Create a user with UID 1010
+RUN useradd -m myuser -u 1010
+# add permission to myuser  to all files
+USER root
+RUN chown -R myuser:myuser /build_zone
+# Use the previously created user to run the container
+USER myuser
+EXPOSE ${CROWNLABS_LISTEN_PORT}
+CMD R -e "options('shiny.port'=${CROWNLABS_LISTEN_PORT},shiny.host='0.0.0.0');library(eDASH);eDASH::run_app()"

NAMESPACE

@@ -1,93 +1,2 @@
 # Generated by roxygen2: do not edit by hand
 
-export(max_scaling)
-export(minmax_scaling)
-export(run_app)
-export(zscore)
-import(dplyr)
-import(ggplot2)
-import(htmltools)
-import(imputeTS)
-import(magrittr)
-import(shiny)
-import(shinydashboard)
-importFrom(MLmetrics,Accuracy)
-importFrom(MLmetrics,ConfusionMatrix)
-importFrom(MLmetrics,Recall)
-importFrom(NbClust,NbClust)
-importFrom(RColorBrewer,brewer.pal)
-importFrom(amap,Kmeans)
-importFrom(dplyr,distinct)
-importFrom(dplyr,filter)
-importFrom(dplyr,mutate)
-importFrom(dplyr,mutate_at)
-importFrom(dplyr,mutate_if)
-importFrom(dplyr,select)
-importFrom(dplyr,select_if)
-importFrom(golem,activate_js)
-importFrom(golem,add_resource_path)
-importFrom(golem,bundle_resources)
-importFrom(golem,favicon)
-importFrom(golem,with_golem_options)
-importFrom(grDevices,png)
-importFrom(grid,gpar)
-importFrom(lubridate,date)
-importFrom(lubridate,is.POSIXct)
-importFrom(lubridate,month)
-importFrom(lubridate,round_date)
-importFrom(lubridate,wday)
-importFrom(magrittr,`%>%`)
-importFrom(partykit,as.party)
-importFrom(partykit,predict.party)
-importFrom(plyr,ddply)
-importFrom(plyr,summarise)
-importFrom(purrr,is_empty)
-importFrom(rlang,is_empty)
-importFrom(rpart,plotcp)
-importFrom(rpart,rpart)
-importFrom(rpart,rpart.control)
-importFrom(scales,date_breaks)
-importFrom(shiny,HTML)
-importFrom(shiny,NS)
-importFrom(shiny,absolutePanel)
-importFrom(shiny,shinyApp)
-importFrom(shiny,tagList)
-importFrom(shinyBS,addPopover)
-importFrom(shinyBS,bsModal)
-importFrom(shinyBS,bsPopover)
-importFrom(shinyBS,bsTooltip)
-importFrom(shinyBS,toggleModal)
-importFrom(shinyFeedback,feedbackDanger)
-importFrom(shinyFeedback,feedbackSuccess)
-importFrom(shinyFeedback,feedbackWarning)
-importFrom(shinyFeedback,hideFeedback)
-importFrom(shinyFeedback,showFeedbackDanger)
-importFrom(shinyFeedback,showFeedbackWarning)
-importFrom(shinyFeedback,useShinyFeedback)
-importFrom(shinyWidgets,dropdownButton)
-importFrom(shinyWidgets,pickerInput)
-importFrom(shinyWidgets,radioGroupButtons)
-importFrom(shinyWidgets,searchInput)
-importFrom(shinyWidgets,sliderTextInput)
-importFrom(shinyWidgets,tooltipOptions)
-importFrom(shinyWidgets,updatePickerInput)
-importFrom(shinyalert,shinyalert)
-importFrom(shinycssloaders,withSpinner)
-importFrom(shinyjs,disable)
-importFrom(shinyjs,disabled)
-importFrom(shinyjs,enable)
-importFrom(shinyjs,runjs)
-importFrom(simputation,impute_cart)
-importFrom(stats,IQR)
-importFrom(stats,cutree)
-importFrom(stats,dist)
-importFrom(stats,hclust)
-importFrom(stats,median)
-importFrom(stats,na.omit)
-importFrom(stats,predict)
-importFrom(stats,quantile)
-importFrom(stats,reformulate)
-importFrom(stats,sd)
-importFrom(tidyr,pivot_wider)
-importFrom(utils,read.csv)
-importFrom(utils,write.csv)

deploy.sh

@@ -0,0 +1,19 @@
+#!/bin/bash
+
+ROOT_FOLDER='dashboard-students' # Get root folder name
+DATE=$(date '+%Y-%m-%d') # Get current date
+LOCAL=false # Set to true if you want to build locally
+
+echo "Building docker image ${ROOT_FOLDER}:${DATE}.v1"
+
+# if local is true, then build locally; else, build online
+if [ "$LOCAL" == "true" ]; then
+    docker build -t harbor.crownlabs.polito.it/crownlabs-standalone/shinyapp/${ROOT_FOLDER}:${DATE}.v1 .
+    docker run -it --rm -p 80:80 harbor.crownlabs.polito.it/crownlabs-standalone/shinyapp/${ROOT_FOLDER}:${DATE}.v1
+    exit 0
+else
+    echo "Login to harbor.crownlabs.polito.it"
+    docker login harbor.crownlabs.polito.it
+    docker buildx build --push -t harbor.crownlabs.polito.it/crownlabs-standalone/shinyapp/${ROOT_FOLDER}:${DATE}.v1 .
+    exit 0
+fi

dev/config_attachment.yaml

@@ -0,0 +1,12 @@
+path.n: NAMESPACE
+path.d: DESCRIPTION
+dir.r: R
+dir.v: vignettes
+dir.t: tests
+extra.suggests: ~
+pkg_ignore: ~
+document: yes
+normalize: yes
+inside_rmd: no
+must.exist: yes
+check_if_suggests_is_installed: no