fix amrex path

.github/workflows/linux.yml

@@ -68,8 +68,6 @@ jobs:
     - name: Repo Dependencies
       run: Utils/CloneDeps.sh
     - name: Build
-      env:
-         PELELMEX_HOME: ${GITHUB_WORKSPACE}
       working-directory: ./Exec/RegTests/EB_PipeFlow/
       run: |
         make TPL COMP=gnu USE_MPI=TRUE
@@ -142,6 +140,8 @@ jobs:
         make -j 2 COMP=gnu
         ./PeleTurb3d.gnu.ex input hit_file=../../HITDecay/hit_ic_4_32.dat input_ncell=32
     - name: Build
+      env:
+         AMREX_HOME: ${GITHUB_WORKSPACE}/Submodules/amrex
       working-directory: ./Exec/RegTests/TurbInflow/
       run: |
         make TPL COMP=gnu USE_MPI=TRUE DEBUG=TRUE
@@ -172,8 +172,8 @@ jobs:
       run: Utils/CloneDeps.sh
     - name: Build AMReX Tools
       env:
-         AMREX_HOME: ${GITHUB_WORKSPACE}/build/amrex
-      working-directory: ./build/amrex/Tools/Plotfile
+         AMREX_HOME: ${GITHUB_WORKSPACE}/Submodules/amrex
+      working-directory: ./Submodules/amrex/Tools/Plotfile
       run: |
         make
     - name: Build PeleLMeX
@@ -184,7 +184,7 @@ jobs:
     - name: Run
       working-directory: ./Exec/RegTests/SprayTest/
       run: |
-        cp ${GITHUB_WORKSPACE}/build/amrex/Tools/Plotfile/fcompare.gnu.ex .
+        cp ${GITHUB_WORKSPACE}/Submodules/amrex/Tools/Plotfile/fcompare.gnu.ex .
         sed -i "s/mpiexec -n 1/mpiexec -n 2/g" multiRuns.py
         ./multiRuns.py
         ./compareOutput.py

Utils/CloneDeps.sh

@@ -1,6 +1,5 @@
 #!/usr/bin/env bash
 
 echo "Getting PeleLMeX dependencies - tests ... "
-export PELELM_HOME=${PWD}/..
 git submodule init
 git submodule update