pr fix

.gitignore

@@ -25,9 +25,10 @@ resources/2d
 .idea/
 # Build debug folder
 cmake-build-debug/
-# lib/math/ folder 
+# lib/math/ folder
 lib/math/
 # .old folders
 src/hierarchies/updaters/.old/
 test/.old/
 examples/gamma_hierarchy/.old/
+.env

CMakeLists.txt

@@ -10,7 +10,7 @@ endif()
 project(bayesmix)
 
 set(CMAKE_CXX_STANDARD 17)
-set(CMAKE_BUILD_TYPE Debug)
+set(CMAKE_BUILD_TYPE Release)
 
 set(CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
 set(CMAKE_CXX_FLAGS_RELEASE "-O3 -funroll-loops -fopenmp -ftree-vectorize -Wno-deprecated")

python/reproducibility/replicate_jss_paper.py

@@ -17,7 +17,6 @@
 OUTPUT_PATH = "reproducibility"
 
 ALGORITHMS = "Neal2 Neal3 Neal8 SplitMerge".split()
-# ALGORITHMS = ["Neal3"]
 
 ALGO_SETTINGS = """
         algo_id: "{}"

resources/tutorial/algo.asciipb

@@ -1,12 +1,12 @@
 ##### GENERIC SETTINGS FOR ALL ALGORITHMS #####
 # Algorithm ID string, e.g. "Neal2"
-algo_id: "SplitMerge"
+algo_id: "Neal2"
 
 # RNG initial seed: any nonnegative integer
 rng_seed: 20201124
 
 # Number of iterations of the algorithm
-iterations: 4000
+iterations: 1100
 
 # Number of initial iterations discarded by the algorithm
 burnin: 100

src/hierarchies/updaters/nnw_updater.h

@@ -31,13 +31,6 @@ class NNWUpdater
 
   ProtoHypersPtr compute_posterior_hypers(AbstractLikelihood &like,
                                           AbstractPriorModel &prior) override;
-
-  std::shared_ptr<AbstractUpdater> clone() const override {
-    auto out =
-        std::make_shared<NNWUpdater>(static_cast<NNWUpdater const &>(*this));
-    out->clear_hypers();
-    return out;
-  }
 };
 
 #endif  // BAYESMIX_HIERARCHIES_UPDATERS_NNW_UPDATER_H_